プロテオーム解析におけるリン酸化タンパク質の高感度分析法に関する基礎的検討とミエリン塩基性タンパク質への応用
従来タンパク質のリン酸化は, ラジオアイソトープ標識法やウエスタンブロット法を用いて研究されてきたが, 我々は質量分析法による高感度分析法の有効性について基礎的な検討を行った. まずリン酸化部位が既知の標準ペプチドやカゼインを用いて, Post-source decay モードによるMALDI-TOF質量分析を行い, セリンおよびトレオニンリン酸化ペプチド検出における有効性を確認した. しかしチロシンリン酸化ペプチドには, 必ずしも有効ではないこともわかった. 検出感度を上げるために, 市販のリン酸化ペプチドおよびリン酸化タンパク質濃縮キットの使用方法の最適化を行い, 有効性を確認した. さら...
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Published in | 生物物理化学 Vol. 49; no. 3; pp. 73 - 81 |
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Main Authors | , , , |
Format | Journal Article |
Language | Japanese |
Published |
日本電気泳動学会
2005
|
Online Access | Get full text |
ISSN | 0031-9082 1349-9785 |
DOI | 10.2198/sbk.49.73 |
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Abstract | 従来タンパク質のリン酸化は, ラジオアイソトープ標識法やウエスタンブロット法を用いて研究されてきたが, 我々は質量分析法による高感度分析法の有効性について基礎的な検討を行った. まずリン酸化部位が既知の標準ペプチドやカゼインを用いて, Post-source decay モードによるMALDI-TOF質量分析を行い, セリンおよびトレオニンリン酸化ペプチド検出における有効性を確認した. しかしチロシンリン酸化ペプチドには, 必ずしも有効ではないこともわかった. 検出感度を上げるために, 市販のリン酸化ペプチドおよびリン酸化タンパク質濃縮キットの使用方法の最適化を行い, 有効性を確認した. さらに我々はこの方法をラットミエリンのミエリン塩基性タンパク質の分析に応用し, リン酸化ペプチドの高感度検出と, 新しいリン酸化部位の特定に成功した. |
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AbstractList | タンパク質のリン酸化は, 細胞内シグナル伝達系, 癌化, アポトーシス, 免疫応答, 代謝調節など, 様々な生物学的過程において最も重要な翻訳後修飾の一つである. プロテオミックスによるタンパク質リン酸化の研究は, 二次元電気泳動後のゲルをPro-Q Diamond蛍光色素などで特異的に染色し, 細胞内タンパク質のリン酸化動態を総合的に解析するという, いわゆる網羅的なアプローチと, 特定のタンパク質に絞り込んでリン酸化の有無やリン酸化部位の特定を行うという掘り下げ的なアプローチの両面で行われる. しかし蛍光染色法や, ウエスタンブロット法では, リン酸化の存在は確認されても, どの位置のアミノ酸残基にリン酸化が起きているかを知ることはできない, これに対しPSD(post-source decay)モードによるMALDI-TOF-MS質量分析や, CID(collision-induced dissociation)モードによるMALDI-Q-TOF-MS/MS, MALDI-QIT-MS/MS, ESI-Q-TOF-MS/MSなどの多段階質量分析は, リン酸化の有無のみならずリン酸化部位の特定にも有効であり, とりわけPSDモードのMALDI-TOF-MS質量分析は最も簡便で, 解析が容易であることから, 今後広く利用されるようになるものと考えられている. 従来タンパク質のリン酸化は, ラジオアイソトープ標識法やウエスタンブロット法を用いて研究されてきたが, 我々は質量分析法による高感度分析法の有効性について基礎的な検討を行った. まずリン酸化部位が既知の標準ペプチドやカゼインを用いて, Post-source decay モードによるMALDI-TOF質量分析を行い, セリンおよびトレオニンリン酸化ペプチド検出における有効性を確認した. しかしチロシンリン酸化ペプチドには, 必ずしも有効ではないこともわかった. 検出感度を上げるために, 市販のリン酸化ペプチドおよびリン酸化タンパク質濃縮キットの使用方法の最適化を行い, 有効性を確認した. さらに我々はこの方法をラットミエリンのミエリン塩基性タンパク質の分析に応用し, リン酸化ペプチドの高感度検出と, 新しいリン酸化部位の特定に成功した. |
Author | 秋山, 翹一 戸田, 年総 木村, 成道 島田, 信子 |
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References | 20) Chou FC-H, Chou C-HJ, Shapira R, Kibler RF. Basis of Microheterogeneity of myelin basic protein. J Biol Chem 1976; 251: 2671-2679. 2) Yamagata A, Kristensen DB, Takeda Y, Miyamoto Y, Okada K, Inamatsu M, Yosizato K. Mapping of phosphorylated proteins on two-dimensional polyacrylamide gels using protein phosphatase. Proteomics 2002; 2: 1267-1276. 4) Corte VDE, Demol H, Goethals M, Damme JV, Gettemans J, Vandekerckhove J. Identification of Tyr 438 as the major in vitro c-Src phosphorylation site in human gelsolin: A mass spectrometric approzch. Protein Sci 1999; 8: 234-241. 12) Neville DCA, Rozanas CR, Price EM, Gruis DB, Verkman AS, Townsend RR. Evidence for phosporylation of serine 753 in CFTR using a novel metal-ion affinity resin and matrix-assisted laser desorption mass spectrometry. Protein Sci 1997; 6: 2436-2445. 5) Oda Y, Huang K, Cross FR, Cowburn D, Chait BT. Accurate quantitation of protein expression and site-specific phosphorylation. Proc Natl Acad Sci 1999; 96: 6591-6596. 11) Susan LC, Micgael JH, Wenying S, R. aymond JD, Roland SA, Steven AC. Mass spectrometry-based methods for phosphorylation site mapping of hyperphoshorylated proteins applied to Netl, a regulator of exit from mitosis in yeast. Mol Cell Proteomics 2002; 1: 186-196. 18) Akiyama K, Ichinose S, Omori A, Sakurai Y, Asou H. Study of expression of myelin basic proteins (MBPs) in developing rat brain using a novel antibody reacting with four major isoforms of MBP. J Neurosci Res 2002; 68: 19-28. 21) Erickson AK, Payne DM, Martino PA, Rossomando AJ, Shabanowitz J, Weber MJ, Hunt DF, Sturgill TW. Identification by mass spectrometry of threonine 97 in bovine myelin basic protein as a specific phosphorylation site for mitogen-activated protein kinase. J Biol Chem 1990; 265: 19728-19735. 6) Oda Y, Nagasu T, Chait BT. Enrichment analysis of phoshorylated proteins as a tool for probing the phoshoproteome. Nat Biotechnol 2001; 19: 379-382. 8) Norton WT, Cammer W. Isolation and characterization of myelin. In: Morell P, editor. Myelin, 2nd, New York: Plenum Press. 1984: 147-180. 23) Talbo GH, Suckau D, Malkoski M, Reynolds EC. MALDI-PSD-MS analysis of the phosphorylation sites of caseinomacropeptide. Peptides 2001; 22; 1093-1098. 3) Kalo MS, Pasquale EB. Muptiple in Vivo Tyrosine Phosphorylation Sites in EphB Recptors. Biochemistry 1999; 38: 14396-14408. 9) Zhou W, Alex MB, Khaledi MG, Tomer KB. Detection and sequencing of phoshopeptides affinity bound to immobilized metal Ion beas by matrix-assisted laser desorption/ionization mass spectrometry. J Am Soc Mass Spectrom 2000; 11: 273-282. 10) Robert RR, Scott RB, David S, Andrew PL. Selective binding of activated pp60C-SRC by an immobilized synthetic phoshopeptide modeled on the carboxyl terminus of pp60C-SRC. Proc Natl Acad Sci 1991; 88: 10696-10700. 15) Posewitz MC, Tempst. P. Immobilized Gallium(III) Affinity chromatography of phosphopeptides. Anal Chem 1999; 71: 2883-2892. 7) Takeda H, Kawasaki A, Takahashi M, Yamada A, Koike T. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of phosphorylated compounds using a novel phosphate capture molecule. Rapid Commun Mass Spectrom 2003; 17: 2075-2081. 17) Metodiev MV, Timanova A, Stone DE. Differential phosphoproteome profiling by affinity capture and tandem matrix-assisted laser desorption/ionization mass spectrometry. Proteomics 2004; 4: 1433-1438. 14) McLachlin DT, Chait BT. Analysis of phosphorylated proteins and peptides by mass spectrometry. Curr Opin Chem Biol 2001; 5: 591-602. 1) Larsen MR, Sorensen GL, Fey SJ, Larsen PM, Roepstoff P. Phosho-proteomics: Evaluation of the use of enzymatic de-phosphorylation and differential mass spegtrometric peptide mass mapping for site specific phosphorylation assignment in proteins separated by gel electrophoresis. Proteomics 2001; 1: 223-238. 16) Ueda K, Kosako H, Fukui Y, Hattori S. Proteomic idnetification of Bc12-associated athanogene 2 as a novel MAPK-activated protein kinase 2 substrate. J Biol Chem 2004; 279: 41815-41821. 22) Marcus K, Immler D, Sternberger J, Meyer HE. Identification of platelet proteins separated by two-dimensional gel electrophoresis and analyzed by matrix assisted laser desorption/ionization-time of flight-mass spectrometry and detection of tyrosine-phosphorylated proteins. Electrophoresis 2000; 21: 2622-2636. 13) Allan S, Ole NJ, Jesper VO, Kim FH, Roman AZ. Electron capture dissociation of singly and multiply phosphorylated peptides. Rapid Commun Mass Spectrom 2000; 14: 1793-1800. 19) Martenson RE, Law MJ, Deibler GE. Identification of multiple in vivo phosphorylation sites in rabbit myelin basic protein. J Biol Chem 1983; 258: 930-935. |
References_xml | – reference: 20) Chou FC-H, Chou C-HJ, Shapira R, Kibler RF. Basis of Microheterogeneity of myelin basic protein. J Biol Chem 1976; 251: 2671-2679. – reference: 6) Oda Y, Nagasu T, Chait BT. Enrichment analysis of phoshorylated proteins as a tool for probing the phoshoproteome. Nat Biotechnol 2001; 19: 379-382. – reference: 5) Oda Y, Huang K, Cross FR, Cowburn D, Chait BT. Accurate quantitation of protein expression and site-specific phosphorylation. Proc Natl Acad Sci 1999; 96: 6591-6596. – reference: 13) Allan S, Ole NJ, Jesper VO, Kim FH, Roman AZ. Electron capture dissociation of singly and multiply phosphorylated peptides. Rapid Commun Mass Spectrom 2000; 14: 1793-1800. – reference: 16) Ueda K, Kosako H, Fukui Y, Hattori S. Proteomic idnetification of Bc12-associated athanogene 2 as a novel MAPK-activated protein kinase 2 substrate. J Biol Chem 2004; 279: 41815-41821. – reference: 11) Susan LC, Micgael JH, Wenying S, R. aymond JD, Roland SA, Steven AC. Mass spectrometry-based methods for phosphorylation site mapping of hyperphoshorylated proteins applied to Netl, a regulator of exit from mitosis in yeast. Mol Cell Proteomics 2002; 1: 186-196. – reference: 19) Martenson RE, Law MJ, Deibler GE. Identification of multiple in vivo phosphorylation sites in rabbit myelin basic protein. J Biol Chem 1983; 258: 930-935. – reference: 23) Talbo GH, Suckau D, Malkoski M, Reynolds EC. MALDI-PSD-MS analysis of the phosphorylation sites of caseinomacropeptide. Peptides 2001; 22; 1093-1098. – reference: 15) Posewitz MC, Tempst. P. Immobilized Gallium(III) Affinity chromatography of phosphopeptides. Anal Chem 1999; 71: 2883-2892. – reference: 18) Akiyama K, Ichinose S, Omori A, Sakurai Y, Asou H. Study of expression of myelin basic proteins (MBPs) in developing rat brain using a novel antibody reacting with four major isoforms of MBP. J Neurosci Res 2002; 68: 19-28. – reference: 1) Larsen MR, Sorensen GL, Fey SJ, Larsen PM, Roepstoff P. Phosho-proteomics: Evaluation of the use of enzymatic de-phosphorylation and differential mass spegtrometric peptide mass mapping for site specific phosphorylation assignment in proteins separated by gel electrophoresis. Proteomics 2001; 1: 223-238. – reference: 17) Metodiev MV, Timanova A, Stone DE. Differential phosphoproteome profiling by affinity capture and tandem matrix-assisted laser desorption/ionization mass spectrometry. Proteomics 2004; 4: 1433-1438. – reference: 3) Kalo MS, Pasquale EB. Muptiple in Vivo Tyrosine Phosphorylation Sites in EphB Recptors. Biochemistry 1999; 38: 14396-14408. – reference: 7) Takeda H, Kawasaki A, Takahashi M, Yamada A, Koike T. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of phosphorylated compounds using a novel phosphate capture molecule. Rapid Commun Mass Spectrom 2003; 17: 2075-2081. – reference: 21) Erickson AK, Payne DM, Martino PA, Rossomando AJ, Shabanowitz J, Weber MJ, Hunt DF, Sturgill TW. Identification by mass spectrometry of threonine 97 in bovine myelin basic protein as a specific phosphorylation site for mitogen-activated protein kinase. J Biol Chem 1990; 265: 19728-19735. – reference: 14) McLachlin DT, Chait BT. Analysis of phosphorylated proteins and peptides by mass spectrometry. Curr Opin Chem Biol 2001; 5: 591-602. – reference: 12) Neville DCA, Rozanas CR, Price EM, Gruis DB, Verkman AS, Townsend RR. Evidence for phosporylation of serine 753 in CFTR using a novel metal-ion affinity resin and matrix-assisted laser desorption mass spectrometry. Protein Sci 1997; 6: 2436-2445. – reference: 9) Zhou W, Alex MB, Khaledi MG, Tomer KB. Detection and sequencing of phoshopeptides affinity bound to immobilized metal Ion beas by matrix-assisted laser desorption/ionization mass spectrometry. J Am Soc Mass Spectrom 2000; 11: 273-282. – reference: 2) Yamagata A, Kristensen DB, Takeda Y, Miyamoto Y, Okada K, Inamatsu M, Yosizato K. Mapping of phosphorylated proteins on two-dimensional polyacrylamide gels using protein phosphatase. Proteomics 2002; 2: 1267-1276. – reference: 10) Robert RR, Scott RB, David S, Andrew PL. Selective binding of activated pp60C-SRC by an immobilized synthetic phoshopeptide modeled on the carboxyl terminus of pp60C-SRC. Proc Natl Acad Sci 1991; 88: 10696-10700. – reference: 22) Marcus K, Immler D, Sternberger J, Meyer HE. Identification of platelet proteins separated by two-dimensional gel electrophoresis and analyzed by matrix assisted laser desorption/ionization-time of flight-mass spectrometry and detection of tyrosine-phosphorylated proteins. Electrophoresis 2000; 21: 2622-2636. – reference: 4) Corte VDE, Demol H, Goethals M, Damme JV, Gettemans J, Vandekerckhove J. Identification of Tyr 438 as the major in vitro c-Src phosphorylation site in human gelsolin: A mass spectrometric approzch. Protein Sci 1999; 8: 234-241. – reference: 8) Norton WT, Cammer W. Isolation and characterization of myelin. In: Morell P, editor. Myelin, 2nd, New York: Plenum Press. 1984: 147-180. |
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Snippet | 従来タンパク質のリン酸化は, ラジオアイソトープ標識法やウエスタンブロット法を用いて研究されてきたが, 我々は質量分析法による高感度分析法の有効性について基礎的な検... タンパク質のリン酸化は, 細胞内シグナル伝達系, 癌化, アポトーシス, 免疫応答, 代謝調節など, 様々な生物学的過程において最も重要な翻訳後修飾の一つである.... |
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Title | プロテオーム解析におけるリン酸化タンパク質の高感度分析法に関する基礎的検討とミエリン塩基性タンパク質への応用 |
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