Human deoxyhypusine hydroxylase, an enzyme involved in regulating cell growth, activates O₂ with a nonheme diiron center

• Published in: Proceedings of the National Academy of Sciences - PNAS Vol. 106; no. 35; pp. 14814 - 14819
• Main Authors: Vu, Van V, Emerson, Joseph P, Martinho, Marlène, Kim, Yeon Sook, Münck, Eckard, Park, Myung Hee, Que, Lawrence Jr
• Format: Journal Article
• Language: English
• Published: United States National Academy of Sciences 01.09.2009; National Acad Sciences
• Subjects: Active sites; acyl carrier protein; Biochemistry; Biological Sciences; BIOSYNTHESIS; Carboxylates; Cell growth; CELL PROLIFERATION; COLOR; convergent evolution; Enzyme Activation; ENZYMES; Eukaryotic Translation Initiation Factor 5A; Ferritins; histidine; Humans; HYDROXYLASES; HYDROXYLATION; INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY; iron; Iron - chemistry; Iron - metabolism; Ligands; METHANE; Mixed Function Oxygenases - chemistry; Mixed Function Oxygenases - metabolism; MUTAGENESIS; national synchrotron light source; OXIDOREDUCTASES; OXYGEN; Oxygen - chemistry; Oxygen - metabolism; Peptide Initiation Factors - metabolism; Physical Sciences; PROTEINS; REGULATIONS; RESIDUES; RESONANCE; RNA-Binding Proteins - metabolism; sequence homology; spectral analysis; Spectroscopy; stearoyl-CoA desaturase; STOICHIOMETRY; Substrate Specificity; TOLUENE
• ISSN: 0027-8424; 1091-6490; 1091-6490
• DOI: 10.1073/pnas.0904553106

Deoxyhypusine hydroxylase is the key enzyme in the biosynthesis of hypusine containing eukaryotic translation initiation factor 5A (eIF5A), which plays an essential role in the regulation of cell proliferation. Recombinant human deoxyhypusine hydroxylase (hDOHH) has been reported to have oxygen- and iron-dependent activity, an estimated iron/holoprotein stoichiometry of 2, and a visible band at 630 nm responsible for the blue color of the as-isolated protein. EPR, Mössbauer, and XAS spectroscopic results presented herein provide direct spectroscopic evidence that hDOHH has an antiferromagnetically coupled diiron center with histidines and carboxylates as likely ligands, as suggested by mutagenesis experiments. Resonance Raman experiments show that its blue chromophore arises from a (μ-1,2-peroxo)diiron(III) center that forms in the reaction of the reduced enzyme with O₂, so the peroxo form of hDOHH is unusually stable. Nevertheless we demonstrate that it can carry out the hydroxylation of the deoxyhypusine residue present in the elF5A substrate. Despite a lack of sequence similarity, hDOHH has a nonheme diiron active site that resembles both in structure and function those found in methane and toluene monooxygenases, bacterial and mammalian ribonucleotide reductases, and stearoyl acyl carrier protein Δ⁹-desaturase from plants, suggesting that the oxygen-activating diiron motif is a solution arrived at by convergent evolution. Notably, hDOHH is the only example thus far of a human hydroxylase with such a diiron active site.