pyDHM: A Python library for applications in digital holographic microscopy

pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust programming language of Python that provides a set of numerical processing algorithms for reconstructing amplitude and phase images for a broa...

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Published inPloS one Vol. 17; no. 10; p. e0275818
Main Authors Castañeda, Raul, Trujillo, Carlos, Doblas, Ana
Format Journal Article
LanguageEnglish
Published San Francisco Public Library of Science 10.10.2022
Public Library of Science (PLoS)
Subjects
Algorithms
Amplitudes
Analysis
Engineering and Technology
Holography
Image reconstruction
Innovations
Java
Libraries
Microscope and microscopy
Microscopy
Physical Sciences
Programming languages
Propagation
Python
Research and Analysis Methods
Robustness (mathematics)
Technology application
United States
Online AccessGet full text
ISSN1932-6203
1932-6203
DOI10.1371/journal.pone.0275818

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Abstract pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust programming language of Python that provides a set of numerical processing algorithms for reconstructing amplitude and phase images for a broad range of optical DHM configurations. The pyDHM implements phase-shifting approaches for in-line and slightly off-axis systems and enables phase compensation for telecentric and non-telecentric systems. In addition, pyDHM includes three propagation algorithms for numerical focusing complex amplitude distributions in DHM and digital holography (DH) setups. We have validated the library using numerical and experimental holograms.
AbstractList pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust programming language of Python that provides a set of numerical processing algorithms for reconstructing amplitude and phase images for a broad range of optical DHM configurations. The pyDHM implements phase-shifting approaches for in-line and slightly off-axis systems and enables phase compensation for telecentric and non-telecentric systems. In addition, pyDHM includes three propagation algorithms for numerical focusing complex amplitude distributions in DHM and digital holography (DH) setups. We have validated the library using numerical and experimental holograms.
pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust programming language of Python that provides a set of numerical processing algorithms for reconstructing amplitude and phase images for a broad range of optical DHM configurations. The pyDHM implements phase-shifting approaches for in-line and slightly off-axis systems and enables phase compensation for telecentric and non-telecentric systems. In addition, pyDHM includes three propagation algorithms for numerical focusing complex amplitude distributions in DHM and digital holography (DH) setups. We have validated the library using numerical and experimental holograms.
pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust programming language of Python that provides a set of numerical processing algorithms for reconstructing amplitude and phase images for a broad range of optical DHM configurations. The pyDHM implements phase-shifting approaches for in-line and slightly off-axis systems and enables phase compensation for telecentric and non-telecentric systems. In addition, pyDHM includes three propagation algorithms for numerical focusing complex amplitude distributions in DHM and digital holography (DH) setups. We have validated the library using numerical and experimental holograms.pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust programming language of Python that provides a set of numerical processing algorithms for reconstructing amplitude and phase images for a broad range of optical DHM configurations. The pyDHM implements phase-shifting approaches for in-line and slightly off-axis systems and enables phase compensation for telecentric and non-telecentric systems. In addition, pyDHM includes three propagation algorithms for numerical focusing complex amplitude distributions in DHM and digital holography (DH) setups. We have validated the library using numerical and experimental holograms.
Audience Academic
Author Castañeda, Raul
Trujillo, Carlos
Doblas, Ana
AuthorAffiliation Universidad Miguel Hernandez de Elche, SPAIN
2 Applied Optics Group, School of Applied Sciences and Engineering, Universidad EAFIT, Medellin, Colombia
1 Optical Imaging Research Laboratory, Department of Electrical and Computer Engineering, The University of Memphis, Memphis, TN, United States of America
AuthorAffiliation_xml – name: 1 Optical Imaging Research Laboratory, Department of Electrical and Computer Engineering, The University of Memphis, Memphis, TN, United States of America
– name: Universidad Miguel Hernandez de Elche, SPAIN
– name: 2 Applied Optics Group, School of Applied Sciences and Engineering, Universidad EAFIT, Medellin, Colombia
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  surname: Trujillo
  fullname: Trujillo, Carlos
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  givenname: Ana
  orcidid: 0000-0003-0448-376X
  surname: Doblas
  fullname: Doblas, Ana
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Snippet pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust...
pyDHM is an open-source Python library aimed at Digital Holographic Microscopy (DHM) applications. The pyDHM is a user-friendly library written in the robust...
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StartPage e0275818
SubjectTerms Algorithms
Amplitudes
Analysis
Engineering and Technology
Holography
Image reconstruction
Innovations
Java
Libraries
Microscope and microscopy
Microscopy
Physical Sciences
Programming languages
Propagation
Python
Research and Analysis Methods
Robustness (mathematics)
Technology application
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Title pyDHM: A Python library for applications in digital holographic microscopy
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