The tomato genome sequence provides insights into fleshy fruit evolution
This paper reports the genome sequence of domesticated tomato, a major crop plant, and a draft sequence for its closest wild relative; comparative genomics reveal very little divergence between the two genomes but some important differences with the potato genome, another important food crop in the...
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| Published in | Nature (London) Vol. 485; no. 7400; pp. 635 - 641 |
|---|---|
| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
Nature Publishing Group UK
31.05.2012
Nature Publishing Group |
| Subjects | |
| Online Access | Get full text |
| ISSN | 0028-0836 1476-4687 1476-4687 |
| DOI | 10.1038/nature11119 |
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| Abstract | This paper reports the genome sequence of domesticated tomato, a major crop plant, and a draft sequence for its closest wild relative; comparative genomics reveal very little divergence between the two genomes but some important differences with the potato genome, another important food crop in the genus
Solanum
.
Tomato (
Solanum lycopersicum
) is a major crop plant and a model system for fruit development.
Solanum
is one of the largest angiosperm genera
1
and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative,
Solanum
pimpinellifolium
2
, and compare them to each other and to the potato genome (
Solanum
tuberosum
). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to
Arabidopsis
, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The
Solanum
lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. |
|---|---|
| AbstractList | Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.
This work was supported by: Argentina: INTA and CONICET. Belgium: Flemish Institute for Biotechnology and Ghent University. China: The State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Ministry of Science and Technology (2006AA10A116, 2004CB720405, 2006CB101907, 2007DFB30080) Ministry of Agriculture (‘948’ Program: 2007-Z5); National Natural Science Foundation (36171319); Postdoctoral Science Foundation (20070420446). EuropeanUnion: FP6 Integrated ProjectEU-SOL PL 016214. France: Institute National de la Recherche Agronomique and Agence/nNationale de la Recherche. Germany: the Max Planck Society. India: Department of Biotechnology, Government of India; Indian Council of Agricultural Research. Italy: Ministry of Research (FIRB-SOL, FIRB-Parallelomics, ItaLyco and GenoPOM projects); Ministry of Agriculture (Agronanotech and Biomassval projects); FILAS foundation; ENEA; CNR-ENEA project L. 191/2009. Japan: Kazusa DNA Research Institute Foundation and National Institute of Vegetable and Tea Science. Korea: KRIBB Basic Research Fund and Crop Functional Genomics Research Center (CFGC), MEST./nNetherlands: Centre for BioSystemsGenomics, Netherlands Organization for Scientific Research. Spain: Fundacio´n Genoma España; Cajamar; FEPEX; Fundación Séneca; ICIA; IFAPA; Fundación Manrique de Lara; Instituto Nacional de Bioinformatica. UK: BBSRC grant BB/C509731/1; DEFRA; SEERAD. USA: NSF (DBI-0116076;/nDBI-0421634; DBI-0606595; IOS-0923312; DBI-0820612; DBI-0605659; DEB-0316614; DBI 0849896 and MCB 1021718); USDA (2007-02773 and 2007-35300-19739); USDA-ARS. We acknowledge the Potato Genome Sequencing Consortiumfor sharing data before publication; potato RNA-Seq data was provided by C. R. Buell from the NSF-funded Potato Genome Sequence and Annotation project; tomato RNA-Seq data by the USDA-funded SolCAP project, N. Sinha and J. Maloof; the Amplicon Express team for BAC pooling services; construction of the Whole Genome Profiling (WGP) physicalmapwas supported by EnzaZaden, RijkZwaan, Vilmorin& Cie,/nand Takii & Co. Keygene N.V. owns patents and patent applications covering its AFLP and Whole Genome Profiling technologies; AFLP and Keygene are registered trademarks of Keygene N.V. Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium(2), and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. Tomato (Solatium lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera (1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium (2), and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. This paper reports the genome sequence of domesticated tomato, a major crop plant, and a draft sequence for its closest wild relative; comparative genomics reveal very little divergence between the two genomes but some important differences with the potato genome, another important food crop in the genus Solanum . Tomato ( Solanum lycopersicum ) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera 1 and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium 2 , and compare them to each other and to the potato genome ( Solanum tuberosum ). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis , but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera1 and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draftsequence of its closest wild relative, Solanum pimpinellifolium^sup 2^, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. [PUBLICATION ABSTRACT] |
| Audience | Academic |
| Author | Guigó Serra, Roderic Tomato Genome Consortium Gianese, S Cámara, Francisco Sato, S |
| AuthorAffiliation | 91 Wageningen University, Laboratory of Plant Breeding, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands 62 Seoul National University, Crop Functional Genomics Center, College of Agriculture and Life Sciences, Seoul, 151-921, Republic of Korea 93 Wellcome Trust Sanger Institute Hinxton, Cambridge CB10 1SA, UK 17 Laboratory of Molecular and Developmental Biology and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100080, China 61 Seoul National University, Department of Agricultural Biotechnology, Seoul, 151-921, Republic of Korea 35 Plateforme bioinformatique Genotoul, UR875 Biométrie et Intelligence Artificielle, INRA, 31326 Castanet-Tolosan, France 54 Department of Plant Science and Plant Pathology, Montana State University, Bozeman, MT 59717, USA 68 Syngenta Biotechnology, Inc. 3054 East Cornwallis Rd, Research Triangle Park, NC 27709 Durham, USA 70 Department of Botany, The Natural History Museum, Cromw |
| AuthorAffiliation_xml | – name: 73 Centre de Regulacio Genomica, Universitat Pompeu Fabra, Dr Aiguader, 88, E-08003 Barcelona, Spain – name: 9 Centro Nacional de Análisis Genómico (CNAG) and National Bioinformatics Institute, C/ Baldiri Reixac 4, Torre I, 08028 Barcelona, Spain – name: 43 Scuola Superiore Sant’Anna, Piazza Martiri della Libertà 33 - 56127 Pisa, Italy – name: 14 National Center for Gene Research, Chinese Academy of Sciences, Shanghai 200233, China – name: 37 Instituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Ciudad Politecnica de la Innovación, escalera 8E, Ingeniero Fausto Elios s/n, 46022 Valencia, Spain – name: 23 Department of Plant Systems Biology, VIB; Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, 9052 Gent, Belgium – name: 16 State Key Laboratory of Plant Cell and Chromosome Engineering and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China – name: 4 Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China – name: 52 Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, 50829 Cologne, Germany – name: 86 Department of Chemistry and Biochemistry, Stephenson Research and Technology Center, University of Oklahoma, Norman, OK 73019, USA – name: 13 State Key Laboratory of Plant Genomics and National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China – name: 66 Sistemas Genomicos, Parque Tecnológico de Valencia, Ronda G. Marconi, 6,46980 Paterna (Valencia), Spain – name: 36 ENSAT, Avenue de l’Agrobiopole BP 32607 31326 Castanet-Tolosan, France – name: 46 Barcelona Supercomputing Center, Nexus II Building, c/ Jordi Girona, 29, 08034 Barcelona, Spain – name: 21 Department of Plant Biology, Cornell University, Ithaca, NY 14853, USA – name: 31 INRA, UR1052 Génétique et amélioration des fruits et légumes, BP 94, 84143 Monfavet CEDEX, France – name: 32 INRA, Biologie du Fruit et Pathologie, 71 rue E. Bourleaux, 33883 Villenave d’Ornon, France – name: 84 University of Naples “Federico II” Department of Soil, Plant, Environmental and Animal Production Sciences, Via Universita’, 100, 80055 Portici (Naples), Italy – name: 70 Department of Botany, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom – name: 90 Wageningen University, Laboratory of Genetics, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands – name: 40 Institute for Biomedical Technologies, National Research Council of Italy, Via F. Cervi 93, 20090 Segrate (Milano), Italy – name: 41 Institute of Plant Genetics, Research Division Portici, National Research Council of Italy, Via Università 133, 80055 Portici, Italy – name: 55 NARO Institute of Vegetable and Tea Science, 360 Kusawa, Ano, Tsu, Mie 514-2392, Japan – name: 53 School of Agriculture, Meiji University, 1-1-1 Higashi-Mita, Tama-ku, Kawasaki-shi, Kanagawa 214-8571, Japan – name: 34 INRA-CNRGV BP52627 31326 Castanet-Tolosan, France – name: 57 Plant Research International, Business Unit Bioscience, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands – name: 59 Roche Applied Science, D-82377 Penzberg, Germany – name: 48 Keygene N.V., Agro Business Park 90, 6708 PW Wageningen, The Netherlands – name: 89 Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100, Udine, Italy – name: 20 Department of Agronomy, National Taiwan University, Taipei, Taiwan – name: 42 Italian National Agency for New technologies, Energy and Sustainable Development:; ENEA, Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy – name: 61 Seoul National University, Department of Agricultural Biotechnology, Seoul, 151-921, Republic of Korea – name: 50 Life Technologies, 500 Cummings Center, Beverly, MA 01915, U.S.A – name: 54 Department of Plant Science and Plant Pathology, Montana State University, Bozeman, MT 59717, USA – name: 58 Institute of Plant Genetic Engineering, Qingdao Agricultural University, Qingdao 266109, China – name: 17 Laboratory of Molecular and Developmental Biology and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100080, China – name: 25 Institute of Industrial Crops, Heilongjiang Academy of Agricultural Sciences, Harbin 150086, China – name: 30 NRC on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi, 110 012, India – name: 82 Center for Genomics and Computational Biology, School of Life Sciences, and School of Sciences, Hebei United University, Tangshan, Hebei 063000, China – name: 64 Institute of Vegetables, Shandong Academy of Agricultural Sciences, Jinan, Shandong, 250100, China – name: 81 Plant Genome Mapping Laboratory, 111 Riverbend Road, University of Georgia, Athens, GA 30602, USA – name: 63 High-tech Research center, Shandong Academy of Agricultural Sciences, Jinan 250000, China – name: 68 Syngenta Biotechnology, Inc. 3054 East Cornwallis Rd, Research Triangle Park, NC 27709 Durham, USA – name: 15 Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China – name: 62 Seoul National University, Crop Functional Genomics Center, College of Agriculture and Life Sciences, Seoul, 151-921, Republic of Korea – name: 91 Wageningen University, Laboratory of Plant Breeding, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands – name: 8 Centre for BioSystems Genomics, PO Box 98, 6700 AB Wageningen, The Netherlands – name: 45 James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK – name: 83 J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – name: 10 Genome Bioinformatics Laboratory Center for Genomic Regulation, Dr Aiguader, 88, E-08003 Barcelona, Spain – name: 67 College of Horticulture, South China Agricultural University, 510642 Guangzhou, China – name: 1 Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan – name: 29 Department of Life Sciences, Imperial College London, London SW7 1AZ, UK – name: 38 Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Malaga - Consejo Superior de Investigaciones Cientificas (IHSM-UMA-CSIC), 29750 Algarrobo-Costa (Málaga), Spain – name: 77 Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110 021, India – name: 49 Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Republic of Korea – name: 33 Unité de Biométrie et d’Intelligence Artificielle UR 875, INRA, F-31320, Castanet Tolosan, France – name: 79 University of East Anglia, School of Computing Sciences:; University of East Anglia, CMP, Norwich NR4 7TJ, UK – name: 19 Department of Biology, Colorado State University, Fort Collins, CO 80523, USA – name: 87 CRIBI, University of Padua, via Ugo Bassi 58/B, 35131 Padova, Italy – name: 80 Department of Biology and the UF Genetics Institute, Cancer & Genetics Research Complex 2033 Mowry Road, PO Box 103610, Gainesville FL, USA – name: 74 Arizona Genomics Institute, BIO-5 Institute for Collaborative Research, School of Plant Sciences, Thomas W. Keating Building, 1657 E. Helen Street, Tucson AZ 85721, USA – name: 60 Seoul National University, Department of Plant Science and Plant Genomics and Breeding Institute, Seoul, 151-921, Republic of Korea – name: 35 Plateforme bioinformatique Genotoul, UR875 Biométrie et Intelligence Artificielle, INRA, 31326 Castanet-Tolosan, France – name: 39 Instituto Nacional de Tecnología Agropecuaría (IB-INTA) and Consejo Nacionalde Investigaciones Científicas y Técnicas (CONICET):; Instituto de Biotecnología, PO Box 25, B1712WAA Castelar, Argentina – name: 93 Wellcome Trust Sanger Institute Hinxton, Cambridge CB10 1SA, UK – name: 72 Universidad de Malaga-Consejo Superior de Investigaciones Cientificas:; Instituto de Hortofruticultura Subtropical y Mediterranea. Departamento de Biologia Molecular y Bioquimica, 29071 Málaga, Spain – name: 2 454 Life Sciences, a Roche company, 15 Commercial Street, Branford, CT 06405, USA – name: 75 Crop Bioinformatics, Institute of Crop Science and Resource Conservation, University of Bonn, 53115 Bonn, Germany – name: 88 Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, USA – name: 6 BMR-Genomics SrL, via Redipuglia 21/A, 35131 Padova, Italy – name: 56 National Institute of Plant Genome Research, New Delhi, 110 067, India – name: 11 Department of Vegetable Science, College of Agronomy and Biotechnology, China Agricultural University, No. 2 Yuanmingyuan Xi Lu, Haidian District, Beijing 100193, China – name: 27 College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China – name: 12 Key Laboratory of Horticultural Crops Genetic Improvement of Ministry of Agriculture, Sino-Dutch Joint Lab of Horticultural Genomics Technology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China – name: 3 Amplicon Express Inc., 2345 Hopkins Court, Pullman, WA 99163, USA – name: 71 Robert W. Holley Center and Boyce Thompson Institute for Plant Research:; United States Department of Agriculture - Agricultural Research Service, Robert W. Holley Center, Tower Road, Cornell University campus, Ithaca NY 14853, USA – name: 47 ICREA, Pg Lluís Companys, 23, 08010, Barcelona, Spain – name: 18 Cold Spring Harbor Laboratory, One Bungtown Road, Cold Spring Harbor, NY 11724, USA – name: 26 Institute for Bioinformatics and Systems Biology (MIPS), Helmholtz Center for Health and Environment, Ingolstädter Landstr. 1, D-85764 Neuherberg, Germany – name: 65 School of life sciences, Sichuan University, Chengdu, Sichuan, 610064, China – name: 85 Division of Plant and Crop Sciences, University of Nottingham, Sutton Bonington, Loughborough LE12 5RD, UK – name: 5 BGI-Shenzhen, Shenzhen 518083, China – name: 51 Life Technologies, 25 avenue de la Baltique, BP 96, 91943 Courtaboeuf Cedex 3, France – name: 94 Ylichron SrL, Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy – name: 28 National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China – name: 69 Norwich Research Park, Norwich NR4 7UH, UK – name: 78 University of East Anglia, School of Biological Sciences:; University of East Anglia, BIO, Norwich NR4 7TJ, UK – name: 76 Department of Plant & Soil Sciences, and Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711, USA – name: 22 Genome Bioinformatics Laboratory; Center for Genomic Regulation (CRG), University Pompeu Fabra, Barcelona, Catalonia, 08003, Spain – name: 44 ENEA, Trisaia Research Center, S.S. Ionica - Km 419.5, 75026 Rotondella (Matera), Italy – name: 92 Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands – name: 7 Boyce Thompson Institute for Plant Research, Tower Road, Cornell University campus, Ithaca, NY 14853, USA – name: 24 Faculty of Agriculture, The Hebrew University of Jerusalem, PO Box 12, Rehovot 76100, Israel |
| Author_xml | – sequence: 1 fullname: Tomato Genome Consortium – sequence: 2 fullname: Sato, S – sequence: 3 fullname: Guigó Serra, Roderic – sequence: 4 fullname: Cámara, Francisco – sequence: 5 fullname: Gianese, S |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22660326$$D View this record in MEDLINE/PubMed https://hal.inrae.fr/hal-02651748$$DView record in HAL |
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| CODEN | NATUAS |
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| ContentType | Journal Article |
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| Copyright | The Author(s) 2012 COPYRIGHT 2012 Nature Publishing Group Copyright Nature Publishing Group May 31, 2012 info:eu-repo/semantics/openAccess http://dx.doi.org/10.1038/nature11119. This article is distributed under the terms of the Creative Commons Attribution-Non-Commercial-Share Alike licence http://creativecommons.org/licenses/by-nc-sa/3.0 Distributed under a Creative Commons Attribution 4.0 International License |
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| Keywords | Lycopersicon-esculentum ; gene ; diversification : arabidopsis ; patterns ; ortholog ; history ; sorghum ; potato |
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| Snippet | This paper reports the genome sequence of domesticated tomato, a major crop plant, and a draft sequence for its closest wild relative; comparative genomics... Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes... Tomato (Solatium lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera (1) and includes... Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera1 and includes... Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes... |
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| SubjectTerms | 631/136 631/208/212/2304 631/449/2491 631/449/2679/2684 Arabidopsis - genetics Artificial chromosomes Binding sites DNA sequencing Evolution Evolution, Molecular Fruit Fruits Genes Genetic aspects Genetic diversity Genetic Variation - genetics Genome, Plant - genetics Genomes Genomics Genètica evolutiva Genètica molecular Genòmica Glycine max - genetics Governmental accounting Humanities and Social Sciences letter Life Sciences Molecular Sequence Data multidisciplinary Nucleotide sequencing Phylogeny Physiological aspects Pipelines Plant genetics Plants Potatoes RNA, Plant - genetics Science Science (multidisciplinary) Sequence Analysis, DNA Solanum lycopersicum - genetics Solanum lycopersicum - physiology Solanum tuberosum - genetics Soybeans Synteny Tomatoes Tomàquets Vegetal Biology |
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| Title | The tomato genome sequence provides insights into fleshy fruit evolution |
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