Recycling diagnostic MRI for empowering brain morphometric research – Critical & practical assessment on learning-based image super-resolution

• Published in: NeuroImage (Orlando, Fla.) Vol. 245; p. 118687
• Main Authors: Liu, Gaoping, Cao, Zehong, Xu, Qiang, Zhang, Qirui, Yang, Fang, Xie, Xinyu, Hao, Jingru, Shi, Yinghuan, Bernhardt, Boris C., He, Yichu, Shi, Feng, Lu, Guangming, Zhang, Zhiqiang
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 15.12.2021; Elsevier Limited; Elsevier
• Subjects: Algorithms; Brain MRI; Brain research; Deep Learning; Epilepsy; Epilepsy - diagnostic imaging; Feasibility studies; Feedback; Female; Humans; Image Interpretation, Computer-Assisted - methods; Image super-resolution; Imaging, Three-Dimensional; Magnetic resonance imaging; Magnetic Resonance Imaging - methods; Male; Morphometric analysis; Morphometry; Neuroimaging - methods; Practical assessment; Sparsity; Brain MRI; Practical assessment; Deep-learning; Morphometric analysis; Image super-resolution
• ISSN: 1053-8119; 1095-9572; 1095-9572
• DOI: 10.1016/j.neuroimage.2021.118687

Preliminary studies have shown the feasibility of deep learning (DL)-based super-resolution (SR) technique for reconstructing thick-slice/gap diagnostic MR images into high-resolution isotropic data, which would be of great significance for brain research field if the vast amount of diagnostic MRI data could be successively put into brain morphometric study. However, less evidence has addressed the practicability of the strategy, because lack of a large-sample available real data for constructing DL model. In this work, we employed a large cohort (n = 2052) of peculiar data with both low through-plane resolution diagnostic and high-resolution isotropic brain MR images from identical subjects. By leveraging a series of SR approaches, including a proposed novel DL algorithm of Structure Constrained Super Resolution Network (SCSRN), the diagnostic images were transformed to high-resolution isotropic data to meet the criteria of brain research in voxel-based and surface-based morphometric analyses. We comprehensively assessed image quality and the practicability of the reconstructed data in a variety of morphometric analysis scenarios. We further compared the performance of SR approaches to the ground truth high-resolution isotropic data. The results showed (i) DL-based SR algorithms generally improve the quality of diagnostic images and render morphometric analysis more accurate, especially, with the most superior performance of the novel approach of SCSRN. (ii) Accuracies vary across brain structures and methods, and (iii) performance increases were higher for voxel than for surface based approaches. This study supports that DL-based image super-resolution potentially recycle huge amount of routine diagnostic brain MRI deposited in sleeping state, and turning them into useful data for neurometric research.