HYR, an extracellular module involved in cellular adhesion and related to the immunoglobulin-like fold

Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of domains, the HYR family, which is predicted to belong to this fold, and which appears to be involved in cellular adhesion. HYR domains were identi...

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Published inProtein science Vol. 9; no. 7; pp. 1382 - 1390
Main Authors CALLEBAUT, ISABELLE, GILGÈS, DELPHINE, VIGON, ISABELLE, MORNON, JEAN-PAUL
Format Journal Article
LanguageEnglish
Published Bristol Cambridge University Press 01.07.2000
Cold Spring Harbor Laboratory Press
Wiley
Subjects
Online AccessGet full text
ISSN0961-8368
1469-896X
DOI10.1110/ps.9.7.1382

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Abstract Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of domains, the HYR family, which is predicted to belong to this fold, and which appears to be involved in cellular adhesion. HYR domains were identified in several eukaryotic proteins, often associated with Complement Control Protein (CCP) modules or arranged in multiple copies. Our analysis provides a sequence and structural basis for understanding the role of these domains in interaction mechanisms and leads to further characterization of heretofore undescribed repeated domains with similar folds found in several bacterial proteins involved in enzymatic activities (some chitinases) or in cell surface adhesion (streptococcal C-alpha antigen).
AbstractList Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of domains, the HYR family, which is predicted to belong to this fold, and which appears to be involved in cellular adhesion. HYR domains were identified in several eukaryotic proteins, often associated with Complement Control Protein (CCP) modules or arranged in multiple copies. Our analysis provides a sequence and structural basis for understanding the role of these domains in interaction mechanisms and leads to further characterization of heretofore undescribed repeated domains with similar folds found in several bacterial proteins involved in enzymatic activities (some chitinases) or in cell surface adhesion (streptococcal C-alpha antigen).Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of domains, the HYR family, which is predicted to belong to this fold, and which appears to be involved in cellular adhesion. HYR domains were identified in several eukaryotic proteins, often associated with Complement Control Protein (CCP) modules or arranged in multiple copies. Our analysis provides a sequence and structural basis for understanding the role of these domains in interaction mechanisms and leads to further characterization of heretofore undescribed repeated domains with similar folds found in several bacterial proteins involved in enzymatic activities (some chitinases) or in cell surface adhesion (streptococcal C-alpha antigen).
Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of domains, the HYR family, which is predicted to belong to this fold, and which appears to be involved in cellular adhesion. HYR domains were identified in several eukaryotic proteins, often associated with Complement Control Protein (CCP) modules or arranged in multiple copies. Our analysis provides a sequence and structural basis for understanding the role of these domains in interaction mechanisms and leads to further characterization of heretofore undescribed repeated domains with similar folds found in several bacterial proteins involved in enzymatic activities (some chitinases) or in cell surface adhesion (streptococcal C-alpha antigen).
Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of domains, the HYR family, which is predicted to belong to this fold, and which appears to be involved in cellular adhesion. HYR domains were identified in several eukaryotic proteins, often associated with Complement Control Protein (CCP) modules or arranged in multiple copies. Our analysis provides a sequence and structural basis for understanding the role of these domains in interaction mechanisms and leads to further characterization of heretofore undescribed repeated domains with similar folds found in several bacterial proteins involved in enzymatic activities (some chitinases) or in cell surface adhesion (streptococcal C-alpha antigen).
Author GILGÈS, DELPHINE
VIGON, ISABELLE
CALLEBAUT, ISABELLE
MORNON, JEAN-PAUL
AuthorAffiliation Systèmes Moléculaires & Biologie Structurale, LMCP, CNRS UMR 7590, Université Paris 6, France
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Cites_doi 10.1111/j.1365-2958.2007.05657.x
10.1016/S0022-2836(84)71582-8
10.1093/bioinformatics/14.10.892
10.1016/S0969-2126(00)00034-4
10.1093/bioinformatics/14.9.755
10.1093/nar/25.17.3389
10.1128/IAI.67.1.193-200.1999
10.1006/jmbi.1993.1381
10.1038/373539a0
10.1016/S0968-0004(98)01298-5
10.1006/jmbi.1994.1312
10.1016/0896-6273(94)90326-3
10.1038/374327a0
10.1093/emboj/18.2.297
10.1093/bioinformatics/15.4.305
10.1093/nar/27.1.260
10.1074/jbc.271.31.18892
10.1126/science.1279805
10.1007/BF00160409
10.1021/bi00122a025
10.1007/s000180050082
10.1093/nar/27.1.215
10.1016/0167-5699(89)90317-4
10.1016/S0969-2126(94)00076-X
10.1017/S0033583500005783
10.1093/nar/27.1.229
10.1126/science.285.5430.1058
10.1016/S0955-0674(96)80100-1
10.1042/0264-6021:3430587
10.1046/j.1365-2958.1999.01470.x
10.1006/dbio.1997.8793
10.1093/hmg/4.12.2339
10.1093/protein/12.7.563
10.1073/pnas.92.15.6793
10.1126/science.7824937
10.1073/pnas.89.19.8990
10.1016/S0014-5793(99)00132-5
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Issue 7
Keywords fibronectin type III
polycystic kidney disease
adhesion
iterative database search
complement control protein
hydrophobic cluster analysis
hyalin
Language English
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References 1995a; 374
1994; 238
1996; 19
1991; 12
1995b; 92
1997; 25
1999; 27
1989; 6
1999; 285
1999; 67
1999; 343
1992; 31
1995; 373
1995; 4
1999; 446
1998; 23
1995; 20
1994; 242
1998; 193
1997; 53
1999; 18
1999; 15
1992; 258
1994; 12
1999; 12
1996; 271
1999; 33
1995; 267
1994; 39
1994; 2
1992; 89
1996; 8
1998; 14
1993; 232
e_1_2_1_20_1
e_1_2_1_40_1
e_1_2_1_23_1
e_1_2_1_24_1
e_1_2_1_21_1
e_1_2_1_22_1
e_1_2_1_27_1
Kraulis PJ (e_1_2_1_26_1) 1991; 12
e_1_2_1_28_1
e_1_2_1_25_1
e_1_2_1_29_1
e_1_2_1_7_1
e_1_2_1_31_1
e_1_2_1_30_1
e_1_2_1_5_1
e_1_2_1_6_1
e_1_2_1_3_1
e_1_2_1_12_1
e_1_2_1_35_1
e_1_2_1_4_1
e_1_2_1_13_1
e_1_2_1_34_1
e_1_2_1_10_1
e_1_2_1_33_1
e_1_2_1_2_1
e_1_2_1_11_1
e_1_2_1_32_1
Bork P (e_1_2_1_8_1) 1995; 20
e_1_2_1_16_1
e_1_2_1_39_1
e_1_2_1_17_1
e_1_2_1_38_1
e_1_2_1_14_1
e_1_2_1_37_1
e_1_2_1_15_1
e_1_2_1_36_1
e_1_2_1_9_1
e_1_2_1_18_1
e_1_2_1_19_1
8176743 - J Mol Biol. 1994 May 13;238(4):528-39
7824937 - Science. 1995 Jan 20;267(5196):386-9
9864215 - Infect Immun. 1999 Jan;67(1):193-200
7932691 - J Mol Biol. 1994 Sep 30;242(4):309-20
8702550 - J Biol Chem. 1996 Aug 2;271(31):18892-7
9351466 - Cell Mol Life Sci. 1997 Aug;53(8):621-45
8870072 - Q Rev Biophys. 1996 May;29(2):119-67
9847184 - Nucleic Acids Res. 1999 Jan 1;27(1):215-9
7885464 - Nature. 1995 Mar 23;374(6520):306-7
9847187 - Nucleic Acids Res. 1999 Jan 1;27(1):229-32
1279805 - Science. 1992 Nov 6;258(5084):987-91
7624321 - Proc Natl Acad Sci U S A. 1995 Jul 18;92(15):6793-7
8634708 - Hum Mol Genet. 1995 Dec;4(12):2339-46
9927721 - Bioinformatics. 1998;14(10):892-3
8331663 - J Mol Biol. 1993 Jul 5;232(1):268-84
10527937 - Biochem J. 1999 Nov 1;343 Pt 3:587-96
7528812 - J Mol Evol. 1994 Dec;39(6):631-43
10436082 - Protein Eng. 1999 Jul;12(7):563-71
10100640 - FEBS Lett. 1999 Mar 5;446(1):189-93
10320398 - Bioinformatics. 1999 Apr;15(4):305-8
2751824 - Immunol Today. 1989 Jun;10(6):177-80
9473317 - Dev Biol. 1998 Jan 15;193(2):115-26
7531291 - Nature. 1995 Feb 9;373(6514):539-44
9254694 - Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
1311202 - Biochemistry. 1992 Feb 25;31(7):2068-73
1409594 - Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):8990-4
7512815 - Neuron. 1994 Apr;12(4):717-31
8081748 - Structure. 1994 May 15;2(5):333-7
9852764 - Trends Biochem Sci. 1998 Nov;23(11):444-7
10446051 - Science. 1999 Aug 13;285(5430):1061-6
10446050 - Science. 1999 Aug 13;285(5430):1058-61
8939654 - Curr Opin Cell Biol. 1996 Oct;8(5):602-8
9889186 - EMBO J. 1999 Jan 15;18(2):297-305
10411737 - Mol Microbiol. 1999 Jul;33(1):208-19
7994575 - Structure. 1994 Aug 15;2(8):755-66
9847196 - Nucleic Acids Res. 1999 Jan 1;27(1):260-2
9918945 - Bioinformatics. 1998;14(9):755-63
References_xml – volume: 271
  start-page: 18892
  year: 1996
  end-page: 18897
  article-title: Identification of a family of streptococcal surface proteins with extremely repetitive structure
  publication-title: J Biol Chem
– volume: 2
  start-page: 333
  year: 1994
  end-page: 337
  article-title: Building proteins with fibronectin type III modules
  publication-title: Structure
– volume: 12
  start-page: 283
  year: 1991
  end-page: 291
  article-title: Molscript—A program to produce both detailed and schematic plots of protein structures
  publication-title: J Appl Crystallogr
– volume: 238
  start-page: 528
  year: 1994
  end-page: 539
  article-title: Many of the immunoglobulin superfamily domains in cell adhesion molecules and surface receptors belong to a new structural set which is close to that containing variable domains
  publication-title: J Mol Biol
– volume: 18
  start-page: 297
  year: 1999
  end-page: 305
  article-title: The structure of a PKD domain from polycystin‐1: Implications for polycystic kidney disease
  publication-title: EMBO J
– volume: 373
  start-page: 539
  year: 1995
  end-page: 544
  article-title: Crystal structure of an integrin‐binding fragment of vascular cell adhesion molecule‐1 at 1.8 Å resolution
  publication-title: Nature
– volume: 53
  start-page: 621
  year: 1997
  end-page: 645
  article-title: Deciphering protein sequence information through hydrophobic cluster analysis (HCA): Current status and perspectives
  publication-title: Cell Mol Life Sci
– volume: 39
  start-page: 631
  year: 1994
  end-page: 643
  article-title: Tracing the spread of fibronectin type III domains in bacterial glycohydrolases
  publication-title: J Mol Evol
– volume: 242
  start-page: 309
  year: 1994
  end-page: 320
  article-title: The immunoglobulin fold. Structural classification, sequence patterns and common core
  publication-title: J Mol Biol
– volume: 33
  start-page: 208
  year: 1999
  end-page: 219
  article-title: The R28 protein of Streptococcus pyogenes is related to several group B streptococcal surface proteins, confers protective immunity and promotes binding to human epithelial cells
  publication-title: Mol Microbiol
– volume: 267
  start-page: 386
  year: 1995
  end-page: 389
  article-title: Solution structure of the epithelial cadherin domain responsible for selective cell adhesion
  publication-title: Science
– volume: 14
  start-page: 892
  year: 1998
  end-page: 893
  article-title: JPred: A consensus secondary structure prediction server
  publication-title: Bioinformatics
– volume: 12
  start-page: 563
  year: 1999
  end-page: 571
  article-title: The immunoglobulin fold family: Sequence analysis and 3D structure comparisons
  publication-title: Protein Eng
– volume: 27
  start-page: 215
  year: 1999
  end-page: 219
  article-title: The PROSITE database, its status in 1999
  publication-title: Nucleic Acids Res
– volume: 20
  issue: 3
  year: 1995
  article-title: A proposed nomenclature for the extracellular protein modules of animals
  publication-title: Trends Biochem Sci
– volume: 89
  start-page: 8990
  year: 1992
  end-page: 8994
  article-title: Proposed acquisition of an animal protein domain by bacteria
  publication-title: Proc Natl Acad Sci USA
– volume: 285
  start-page: 1058
  year: 1999
  end-page: 1061
  article-title: Structural basis of chaperone function and pilus biogenesis
  publication-title: Science
– volume: 4
  start-page: 2339
  year: 1995
  end-page: 2346
  article-title: A gene (SRPX) encoding a sushi‐repeat‐containing protein is deleted in patients with X‐linked retinitis pigmentosa
  publication-title: Hum Mol Genet
– volume: 19
  start-page: 119
  year: 1996
  end-page: 167
  article-title: Structure and distribution of modules in extracellular proteins
  publication-title: Q Rev Biophys
– volume: 27
  start-page: 229
  year: 1999
  end-page: 232
  article-title: SMART: Identification and annotation of domains from signalling and extracellular protein sequences
  publication-title: Nucleic Acids Res
– volume: 193
  start-page: 115
  year: 1998
  end-page: 126
  article-title: A molecular analysis of hyalin, a substrate for cell adhesion in the hyaline layer of the sea urchin embryo
  publication-title: Dev Biol
– volume: 14
  start-page: 755
  year: 1998
  end-page: 763
  article-title: Profile hidden Markov models
  publication-title: Bioinformatics
– volume: 12
  start-page: 717
  year: 1994
  end-page: 731
  article-title: Crystal structure of tandem type III fibronectin domains from Drosophila neuroglian at 2.0 Å
  publication-title: Neuron
– volume: 31
  start-page: 2068
  year: 1992
  end-page: 2073
  article-title: HNMR assignment and secondary structure of the cell adhesion type III module of fibronectin
  publication-title: Biochemistry
– volume: 2
  start-page: 755
  year: 1994
  end-page: 766
  article-title: Crystal structure of the extracellular region of the human cell adhesion molecule CD2 at 2.5 Å resolution
  publication-title: Structure
– volume: 23
  start-page: 444
  year: 1998
  end-page: 447
  article-title: Iterated profile searches with PSI‐BLAST–A tool for discovery in protein databases
  publication-title: Trends Biochem Sci
– volume: 27
  start-page: 260
  year: 1999
  end-page: 262
  article-title: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
  publication-title: Nucleic Acids Res
– volume: 25
  start-page: 3389
  year: 1997
  end-page: 3402
  article-title: Gapped BLAST and PSI‐BLAST: A new generation of protein database search programs
  publication-title: Nucleic Acids Res
– volume: 285
  start-page: 1061
  year: 1999
  end-page: 1066
  article-title: X‐ray structure of the FimC‐FimH chaperone‐adhesin complex from uropathogenic Escherichia coli
  publication-title: Science
– volume: 343
  start-page: 587
  year: 1999
  end-page: 596
  article-title: The third chitinase gene (chiC) of Serratia marcescens 2170 and the relationship of its product to other bacterial chitinases
  publication-title: Biochem J
– volume: 15
  start-page: 305
  year: 1999
  end-page: 308
  article-title: ESPript: Analysis of multiple sequence alignments in PostScript
  publication-title: Bioinformatics
– volume: 258
  start-page: 987
  year: 1992
  end-page: 991
  article-title: Structure of a fibronectin type III domain from tenascin phased by MAD analysis of selenomethyionyl protein
  publication-title: Science
– volume: 92
  start-page: 6793
  year: 1995b
  end-page: 6797
  article-title: Considerations on the folding topology and evolutionary origin of cadherin domains
  publication-title: Proc Natl Acad Sci USA
– volume: 232
  start-page: 268
  year: 1993
  end-page: 284
  article-title: Solution structure of a pair of complement modules by nuclear magnetic resonance
  publication-title: J Mol Biol
– volume: 6
  start-page: 177
  year: 1989
  end-page: 180
  article-title: Structure‐function relationships of the complement components
  publication-title: Immunol Today
– volume: 8
  start-page: 602
  year: 1996
  end-page: 608
  article-title: Three‐dimensional structure of cell adhesion molecules
  publication-title: Curr Opin Cell Biol
– volume: 446
  start-page: 189
  year: 1999
  end-page: 193
  article-title: The BAH (Bromo‐Adjacent Homology) domain: A link between methylation, replication and transcriptional regulation
  publication-title: FEBS Lett
– volume: 67
  start-page: 193
  year: 1999
  end-page: 200
  article-title: Infection‐derived Enterococcus faecalis strains are enriched in esp, a gene encoding a novel surface protein
  publication-title: Infect Immun
– volume: 374
  start-page: 306
  year: 1995a
  end-page: 307
  article-title: Structural basis of cell cell adhesion by cadherins
  publication-title: Nature
– ident: e_1_2_1_16_1
  doi: 10.1111/j.1365-2958.2007.05657.x
– ident: e_1_2_1_11_1
  doi: 10.1016/S0022-2836(84)71582-8
– ident: e_1_2_1_17_1
  doi: 10.1093/bioinformatics/14.10.892
– ident: e_1_2_1_15_1
  doi: 10.1016/S0969-2126(00)00034-4
– ident: e_1_2_1_18_1
  doi: 10.1093/bioinformatics/14.9.755
– ident: e_1_2_1_3_1
  doi: 10.1093/nar/25.17.3389
– ident: e_1_2_1_34_1
  doi: 10.1128/IAI.67.1.193-200.1999
– volume: 12
  start-page: 283
  year: 1991
  ident: e_1_2_1_26_1
  article-title: Molscript—A program to produce both detailed and schematic plots of protein structures
  publication-title: J Appl Crystallogr
– ident: e_1_2_1_4_1
  doi: 10.1006/jmbi.1993.1381
– ident: e_1_2_1_25_1
  doi: 10.1038/373539a0
– ident: e_1_2_1_2_1
  doi: 10.1016/S0968-0004(98)01298-5
– volume: 20
  issue: 3
  year: 1995
  ident: e_1_2_1_8_1
  article-title: A proposed nomenclature for the extracellular protein modules of animals
  publication-title: Trends Biochem Sci
– ident: e_1_2_1_21_1
  doi: 10.1006/jmbi.1994.1312
– ident: e_1_2_1_23_1
  doi: 10.1016/0896-6273(94)90326-3
– ident: e_1_2_1_35_1
  doi: 10.1038/374327a0
– ident: e_1_2_1_12_1
  doi: 10.1093/emboj/18.2.297
– ident: e_1_2_1_19_1
  doi: 10.1093/bioinformatics/15.4.305
– ident: e_1_2_1_6_1
  doi: 10.1093/nar/27.1.260
– ident: e_1_2_1_39_1
  doi: 10.1074/jbc.271.31.18892
– ident: e_1_2_1_27_1
  doi: 10.1126/science.1279805
– ident: e_1_2_1_28_1
  doi: 10.1007/BF00160409
– ident: e_1_2_1_5_1
  doi: 10.1021/bi00122a025
– ident: e_1_2_1_14_1
  doi: 10.1007/s000180050082
– ident: e_1_2_1_22_1
  doi: 10.1093/nar/27.1.215
– ident: e_1_2_1_32_1
  doi: 10.1016/0167-5699(89)90317-4
– ident: e_1_2_1_7_1
  doi: 10.1016/S0969-2126(94)00076-X
– ident: e_1_2_1_10_1
  doi: 10.1017/S0033583500005783
– ident: e_1_2_1_31_1
  doi: 10.1093/nar/27.1.229
– ident: e_1_2_1_33_1
  doi: 10.1126/science.285.5430.1058
– ident: e_1_2_1_24_1
  doi: 10.1016/S0955-0674(96)80100-1
– ident: e_1_2_1_38_1
  doi: 10.1042/0264-6021:3430587
– ident: e_1_2_1_37_1
  doi: 10.1046/j.1365-2958.1999.01470.x
– ident: e_1_2_1_40_1
  doi: 10.1006/dbio.1997.8793
– ident: e_1_2_1_29_1
  doi: 10.1093/hmg/4.12.2339
– ident: e_1_2_1_20_1
  doi: 10.1093/protein/12.7.563
– ident: e_1_2_1_36_1
  doi: 10.1073/pnas.92.15.6793
– ident: e_1_2_1_30_1
  doi: 10.1126/science.7824937
– ident: e_1_2_1_9_1
  doi: 10.1073/pnas.89.19.8990
– ident: e_1_2_1_13_1
  doi: 10.1016/S0014-5793(99)00132-5
– reference: 10320398 - Bioinformatics. 1999 Apr;15(4):305-8
– reference: 8870072 - Q Rev Biophys. 1996 May;29(2):119-67
– reference: 8176743 - J Mol Biol. 1994 May 13;238(4):528-39
– reference: 7885464 - Nature. 1995 Mar 23;374(6520):306-7
– reference: 10446051 - Science. 1999 Aug 13;285(5430):1061-6
– reference: 10100640 - FEBS Lett. 1999 Mar 5;446(1):189-93
– reference: 7624321 - Proc Natl Acad Sci U S A. 1995 Jul 18;92(15):6793-7
– reference: 9889186 - EMBO J. 1999 Jan 15;18(2):297-305
– reference: 7994575 - Structure. 1994 Aug 15;2(8):755-66
– reference: 2751824 - Immunol Today. 1989 Jun;10(6):177-80
– reference: 9847184 - Nucleic Acids Res. 1999 Jan 1;27(1):215-9
– reference: 8939654 - Curr Opin Cell Biol. 1996 Oct;8(5):602-8
– reference: 9927721 - Bioinformatics. 1998;14(10):892-3
– reference: 10446050 - Science. 1999 Aug 13;285(5430):1058-61
– reference: 9918945 - Bioinformatics. 1998;14(9):755-63
– reference: 9852764 - Trends Biochem Sci. 1998 Nov;23(11):444-7
– reference: 10411737 - Mol Microbiol. 1999 Jul;33(1):208-19
– reference: 1279805 - Science. 1992 Nov 6;258(5084):987-91
– reference: 9864215 - Infect Immun. 1999 Jan;67(1):193-200
– reference: 9847187 - Nucleic Acids Res. 1999 Jan 1;27(1):229-32
– reference: 7512815 - Neuron. 1994 Apr;12(4):717-31
– reference: 8702550 - J Biol Chem. 1996 Aug 2;271(31):18892-7
– reference: 9847196 - Nucleic Acids Res. 1999 Jan 1;27(1):260-2
– reference: 10436082 - Protein Eng. 1999 Jul;12(7):563-71
– reference: 10527937 - Biochem J. 1999 Nov 1;343 Pt 3:587-96
– reference: 1409594 - Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):8990-4
– reference: 7531291 - Nature. 1995 Feb 9;373(6514):539-44
– reference: 8081748 - Structure. 1994 May 15;2(5):333-7
– reference: 9473317 - Dev Biol. 1998 Jan 15;193(2):115-26
– reference: 7528812 - J Mol Evol. 1994 Dec;39(6):631-43
– reference: 9254694 - Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
– reference: 7932691 - J Mol Biol. 1994 Sep 30;242(4):309-20
– reference: 8634708 - Hum Mol Genet. 1995 Dec;4(12):2339-46
– reference: 9351466 - Cell Mol Life Sci. 1997 Aug;53(8):621-45
– reference: 1311202 - Biochemistry. 1992 Feb 25;31(7):2068-73
– reference: 7824937 - Science. 1995 Jan 20;267(5196):386-9
– reference: 8331663 - J Mol Biol. 1993 Jul 5;232(1):268-84
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Snippet Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of...
Domains belonging to the immunoglobulin‐like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of...
Domains belonging to the immunoglobulin-like fold are responsible for a wide variety of molecular recognition processes. Here we describe a new family of...
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StartPage 1382
SubjectTerms adhesion
Amino Acid Sequence
Bacterial Proteins - chemistry
Biochemistry, Molecular Biology
Cell Adhesion - physiology
complement control protein
Extracellular Matrix Proteins - chemistry
Extracellular Matrix Proteins - metabolism
fibronectin type III
Fibronectins - chemistry
FOR THE RECORD
hyalin
Hyalin - chemistry
hydrophobic cluster analysis
Immunoglobulins - chemistry
iterative database search
Life Sciences
Molecular Sequence Data
polycystic kidney disease
Protein Folding
Proteins - chemistry
Repetitive Sequences, Amino Acid
Sequence Homology, Amino Acid
Structural Biology
TRPP Cation Channels
Title HYR, an extracellular module involved in cellular adhesion and related to the immunoglobulin-like fold
URI https://www.cambridge.org/core/product/identifier/S0961836800000328/type/journal_article
https://onlinelibrary.wiley.com/doi/abs/10.1110%2Fps.9.7.1382
https://www.ncbi.nlm.nih.gov/pubmed/10933504
https://www.proquest.com/docview/71734593
https://hal.science/hal-02401000
https://pubmed.ncbi.nlm.nih.gov/PMC2144677
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