Multi-Omic Admission-Based Prognostic Biomarkers Identified by Machine Learning Algorithms Predict Patient Recovery and 30-Day Survival in Trauma Patients

• Published in: Metabolites Vol. 12; no. 9; p. 774
• Main Authors: Abdelhamid, Sultan S., Scioscia, Jacob, Vodovotz, Yoram, Wu, Junru, Rosengart, Anna, Sung, Eunseo, Rahman, Syed, Voinchet, Robert, Bonaroti, Jillian, Li, Shimena, Darby, Jennifer L., Kar, Upendra K., Neal, Matthew D., Sperry, Jason, Das, Jishnu, Billiar, Timothy R.
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 23.08.2022; MDPI
• Subjects: Accuracy; Algorithms; Aptamers; Biological markers; Biomarkers; Blood pressure; Cardiac arrhythmia; Clinical trials; Datasets; Enrollments; FDA approval; Feature selection; Generalized linear models; Health aspects; Hypotension; Identification and classification; Learning algorithms; Machine learning; Mass spectroscopy; Metabolomics; multi-omics; Patient outcomes; Patients; Plasma; Prognosis; prognostic; Proteomics; Support vector machines; Survival; Trauma; Trauma centers; Traumatic brain injury; Wounds and injuries; United States; United States > US; prognostic; trauma; multi-omics; proteomics; machine learning; biomarkers
• ISSN: 2218-1989; 2218-1989
• DOI: 10.3390/metabo12090774

Admission-based circulating biomarkers for the prediction of outcomes in trauma patients could be useful for clinical decision support. It is unknown which molecular classes of biomolecules can contribute biomarkers to predictive modeling. Here, we analyzed a large multi-omic database of over 8500 markers (proteomics, metabolomics, and lipidomics) to identify prognostic biomarkers in the circulating compartment for adverse outcomes, including mortality and slow recovery, in severely injured trauma patients. Admission plasma samples from patients (n = 129) enrolled in the Prehospital Air Medical Plasma (PAMPer) trial were analyzed using mass spectrometry (metabolomics and lipidomics) and aptamer-based (proteomics) assays. Biomarkers were selected via Least Absolute Shrinkage and Selection Operator (LASSO) regression modeling and machine learning analysis. A combination of five proteins from the proteomic layer was best at discriminating resolvers from non-resolvers from critical illness with an Area Under the Receiver Operating Characteristic curve (AUC) of 0.74, while 26 multi-omic features predicted 30-day survival with an AUC of 0.77. Patients with traumatic brain injury as part of their injury complex had a unique subset of features that predicted 30-day survival. Our findings indicate that multi-omic analyses can identify novel admission-based prognostic biomarkers for outcomes in trauma patients. Unique biomarker discovery also has the potential to provide biologic insights.