Sparse-to-dense coarse-to-fine depth estimation for colonoscopy

• Published in: Computers in biology and medicine Vol. 160; p. 106983
• Main Authors: Liu, Ruyu, Liu, Zhengzhe, Lu, Jiaming, Zhang, Guodao, Zuo, Zhigui, Sun, Bo, Zhang, Jianhua, Sheng, Weiguo, Guo, Ran, Zhang, Lejun, Hua, Xiaozhen
• Format: Journal Article
• Language: English
• Published: United States Elsevier Ltd 01.06.2023; Elsevier Limited
• Subjects: Algorithms; Colon - diagnostic imaging; Colon cancer; Colonoscopy; Colorectal cancer; Deep learning; Depth estimation; Depth perception; Endoscopic SLAM; Feedback, Sensory; Finite element method; Humans; Internal Medicine; Medical metaverse; Optimization; Other; Surface layers; Surgical mesh; Texture; Three dimensional models; Visual perception; Deep learning; Depth estimation; Endoscopic SLAM; Medical metaverse
• ISSN: 0010-4825; 1879-0534; 1879-0534
• DOI: 10.1016/j.compbiomed.2023.106983

Colonoscopy, as the golden standard for screening colon cancer and diseases, offers considerable benefits to patients. However, it also imposes challenges on diagnosis and potential surgery due to the narrow observation perspective and limited perception dimension. Dense depth estimation can overcome the above limitations and offer doctors straightforward 3D visual feedback. To this end, we propose a novel sparse-to-dense coarse-to-fine depth estimation solution for colonoscopic scenes based on the direct SLAM algorithm. The highlight of our solution is that we utilize the scattered 3D points obtained from SLAM to generate accurate and dense depth in full resolution. This is done by a deep learning (DL)-based depth completion network and a reconstruction system. The depth completion network effectively extracts texture, geometry, and structure features from sparse depth along with RGB data to recover the dense depth map. The reconstruction system further updates the dense depth map using a photometric error-based optimization and a mesh modeling approach to reconstruct a more accurate 3D model of colons with detailed surface texture. We show the effectiveness and accuracy of our depth estimation method on near photo-realistic challenging colon datasets. Experiments demonstrate that the strategy of sparse-to-dense coarse-to-fine can significantly improve the performance of depth estimation and smoothly fuse direct SLAM and DL-based depth estimation into a complete dense reconstruction system.