Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging

• Published in: Nature communications Vol. 16; no. 1; pp. 6699 - 10
• Main Authors: Ibrahim, Khalid A., Cathala, Camille, Bevilacqua, Carlo, Feletti, Lely, Prevedel, Robert, Lashuel, Hilal A., Radenovic, Aleksandra
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 24.07.2025; Nature Publishing Group; Nature Portfolio
• Subjects: 14/63; 631/1647/328; 639/925/930/2735; Aggregates; Automation; Biomechanics; Deep Learning; Fluorescence; Humanities and Social Sciences; Humans; Huntington Disease - metabolism; Kinetics; Mechanical properties; Medical imaging; Microscopy; Microscopy - methods; Microscopy, Fluorescence - methods; multidisciplinary; Neural networks; Neural Networks, Computer; Neurodegenerative Diseases; Phototoxicity; Protein Aggregates; Protein Aggregation, Pathological - diagnostic imaging; Protein Folding; Protein interaction; Proteins; Science; Science (multidisciplinary)
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-025-60912-0

The process of protein aggregation, central to neurodegenerative diseases like Huntington’s, is challenging to study due to its unpredictable nature and relatively rapid kinetics. Understanding its biomechanics is crucial for unraveling its role in disease progression and cellular toxicity. Brillouin microscopy offers unique advantages for studying biomechanical properties, yet is limited by slow imaging speed, complicating its use for rapid and dynamic processes like protein aggregation. To overcome these limitations, we developed a self-driving microscope that uses deep learning to predict the onset of aggregation from a single fluorescence image of soluble protein, achieving 91% accuracy. The system triggers optimized multimodal imaging when aggregation is imminent, enabling intelligent Brillouin microscopy of this dynamic biomechanical process. Furthermore, we demonstrate that by detecting mature aggregates in real time using brightfield images and a neural network, Brillouin microscopy can be used to study their biomechanical properties without the need for fluorescence labeling, minimizing phototoxicity and preserving sample health. This autonomous microscopy approach advances the study of aggregation kinetics and biomechanics in living cells, offering a powerful tool for investigating the role of protein misfolding and aggregation in neurodegeneration. This work presents a self-driving microscope that can predict the onset of protein aggregation from a single fluorescence image of soluble protein with 91% accuracy. This enables intelligent Brillouin microscopy of this dynamic biomechanical process.