Enhanced Spatial Fuzzy C-Means Algorithm for Brain Tissue Segmentation in T1 Images

• Published in: Neuroinformatics (Totowa, N.J.) Vol. 22; no. 4; pp. 407 - 420
• Main Authors: Jafrasteh, Bahram, Lubián-Gutiérrez, Manuel, Lubián-López, Simón Pedro, Benavente-Fernández, Isabel
• Format: Journal Article
• Language: English
• Published: New York Springer US 01.10.2024; Springer Nature B.V
• Subjects: Adaptability; Algorithms; Bioinformatics; Biomedical and Life Sciences; Biomedicine; Brain injury; Cerebrospinal fluid; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Image processing; Information processing; Magnetic resonance imaging; Neuroimaging; Neurology; Neurosciences; Segmentation; Substantia alba; Substantia grisea; Magnetic resonance imaging (MRI); 3D T1 MRI images; Brain tissue segmentation; Enhanced spatial fuzzy C-means (esFCM) algorithm; Structural similarity index (SSIM)
• ISSN: 1559-0089; 1539-2791; 1559-0089
• DOI: 10.1007/s12021-024-09661-x

Magnetic Resonance Imaging (MRI) plays an important role in neurology, particularly in the precise segmentation of brain tissues. Accurate segmentation is crucial for diagnosing brain injuries and neurodegenerative conditions. We introduce an Enhanced Spatial Fuzzy C-means (esFCM) algorithm for 3D T1 MRI segmentation to three tissues, i.e. White Matter (WM), Gray Matter (GM), and Cerebrospinal Fluid (CSF). The esFCM employs a weighted least square algorithm utilizing the Structural Similarity Index (SSIM) for polynomial bias field correction. It also takes advantage of the information from the membership function of the last iteration to compute neighborhood impact. This strategic refinement enhances the algorithm’s adaptability to complex image structures, effectively addressing challenges such as intensity irregularities and contributing to heightened segmentation accuracy. We compare the segmentation accuracy of esFCM against four variants of FCM, Gaussian Mixture Model (GMM) and FSL and ANTs algorithms using four various dataset, employing three measurement criteria. Comparative assessments underscore esFCM’s superior performance, particularly in scenarios involving added noise and bias fields.The obtained results emphasize the significant potential of the proposed method in the segmentation of MRI images.