Respiratory nitrate reductase from haloarchaeon Haloferax mediterranei: biochemical and genetic analysis

• Published in: Biochimica et biophysica acta Vol. 1674; no. 1; pp. 50 - 59
• Main Authors: Lledó, B., Martı́nez-Espinosa, R.M., Marhuenda-Egea, F.C., Bonete, M.J.
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 06.09.2004
• Subjects: Amino Acid Sequence; Archaea; Archaeal Proteins - genetics; Archaeal Proteins - isolation & purification; Archaeal Proteins - metabolism; Base Sequence; Cell Respiration - physiology; Cluster; Gene Expression Regulation, Enzymologic; Haloferax mediterranei - enzymology; Halophile; Molecular Sequence Data; Nitrate Reductase; Nitrate Reductases - genetics; Nitrate Reductases - isolation & purification; Nitrate Reductases - metabolism; Nitrates - metabolism; Open Reading Frames; Operon; Oxygen - metabolism; Protein Subunits - genetics; Protein Subunits - metabolism; Respiratory nitrate pathway; Sequence Alignment; DT; Archaea; Respiratory nitrate pathway; Cluster; Halophile; MV; Nar
• ISSN: 0304-4165; 0006-3002; 1872-8006
• DOI: 10.1016/j.bbagen.2004.05.007

The Haloferax mediterranei nar operon has been sequenced and its regulation has been characterized at transcriptional level. The nar operon encodes seven open reading frames(ORFs) (ORF1 narB, narC, ORF4, narG, narH, ORF7 and narJ). ORF1, ORF4 and ORF7 are open reading frames with no assigned function, however the rest of them encoded different proteins. narB codes for a 219-amino-acid-residue iron Rieske protein. narC encodes a protein of 486 amino acid residues identified by databases searches as cytochrome- b ( narC). The narG gene encodes a protein with 983 amino acid residues and is identified as a respiratory nitrate reductase catalytic subunit ( narG). NarH protein has been identified as an electron transfer respiratory nitrate reductase subunit ( narH). The last ORF encodes a chaperonin-like protein ( narJ) of 242 amino acid residues. The respiratory nitrate reductase was purified 21-fold from H. mediterranei membranes. Based on SDS-PAGE and gel-filtration chromatography under native conditions, the enzyme complex consists of two subunits of 112 and 61 kDa. The optimum temperature for activity was 70 °C at 3.4 M NaCl and the stability did not show a direct dependence on salt concentration. Respiratory nitrate reductase showed maximum activity at pH 7.9 and pH 8.2 when assays were carried out at 40 and 60 °C, respectively. The absorption spectrum indicated that Nar contains Fe–S clusters. Reverse transcriptase (RT-PCR) shows that regulation of nar genes occurs at transcriptional level induced by oxygen-limiting conditions and the presence of nitrate.