Simultaneous NODDI and GFA parameter map generation from subsampled q‐space imaging using deep learning

• Published in: Magnetic resonance in medicine Vol. 81; no. 4; pp. 2399 - 2411
• Main Authors: Gibbons, Eric K., Hodgson, Kyler K., Chaudhari, Akshay S., Richards, Lorie G., Majersik, Jennifer J., Adluru, Ganesh, DiBella, Edward V.R.
• Format: Journal Article
• Language: English
• Published: United States Wiley Subscription Services, Inc 01.04.2019
• Subjects: Aged; Algorithms; Anisotropy; Artificial intelligence; Artificial neural networks; Brain - diagnostic imaging; Brain Ischemia - diagnostic imaging; Computer applications; Deep Learning; Diffusion Magnetic Resonance Imaging; diffusion spectrum imaging; Female; GFA; Humans; Image quality; Imaging, Three-Dimensional; Learning algorithms; Machine learning; Male; Middle Aged; Neural networks; Neural Networks, Computer; Neurites - metabolism; NODDI; Parameter estimation; Predictions; Prognosis; q‐space; Reproducibility of Results; Stroke; Stroke - diagnostic imaging; Test procedures; Treatment Outcome; NODDI; q-space; diffusion spectrum imaging; GFA; deep-learning; stroke
• ISSN: 0740-3194; 1522-2594; 1522-2594
• DOI: 10.1002/mrm.27568

Purpose To develop a robust multidimensional deep‐learning based method to simultaneously generate accurate neurite orientation dispersion and density imaging (NODDI) and generalized fractional anisotropy (GFA) parameter maps from undersampled q‐space datasets for use in stroke imaging. Methods Traditional diffusion spectrum imaging (DSI) capable of producing accurate NODDI and GFA parameter maps requires hundreds of q‐space samples which renders the scan time clinically untenable. A convolutional neural network (CNN) was trained to generated NODDI and GFA parameter maps simultaneously from 10× undersampled q‐space data. A total of 48 DSI scans from 15 stroke patients and 14 normal subjects were acquired for training, validating, and testing this method. The proposed network was compared to previously proposed voxel‐wise machine learning based approaches for q‐space imaging. Network‐generated images were used to predict stroke functional outcome measures. Results The proposed network achieves significant performance advantages compared to previously proposed machine learning approaches, showing significant improvements across image quality metrics. Generating these parameter maps using CNNs also comes with the computational benefits of only needing to generate and train a single network instead of multiple networks for each parameter type. Post‐stroke outcome prediction metrics do not appreciably change when using images generated from this proposed technique. Over three test participants, the predicted stroke functional outcome scores were within 1–6% of the clinical evaluations. Conclusions Estimates of NODDI and GFA parameters estimated simultaneously with a deep learning network from highly undersampled q‐space data were improved compared to other state‐of‐the‐art methods providing a 10‐fold reduction scan time compared to conventional methods.