Improved synthetic T1-weighted images for cerebral tissue segmentation in neurological diseases

• Published in: Magnetic resonance imaging Vol. 61; pp. 158 - 166
• Main Authors: Gracien, René-Maxime, van Wijnen, Alexandra, Maiworm, Michelle, Petrov, Franca, Merkel, Nina, Paule, Esther, Steinmetz, Helmuth, Knake, Susanne, Rosenow, Felix, Wagner, Marlies, Deichmann, Ralf
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier Inc 01.09.2019
• Subjects: Adult; Algorithms; Brain - diagnostic imaging; Databases, Factual; Epilepsy; Epilepsy - diagnostic imaging; Female; Focal cortical dysplasia; Humans; Image Processing, Computer-Assisted - methods; Magnetic Resonance Imaging; Male; Middle Aged; Multiple sclerosis (MS); Multiple Sclerosis, Relapsing-Remitting - diagnostic imaging; Nervous System Diseases - diagnostic imaging; Protons; Quantitative MRI; Synthetic images; Young Adult; RRMS; Focal cortical dysplasia; Epilepsy; qMRI; CNS; GLM; VFA; SPM; MP-RAGE; T; BW; SNR; WM; T1; FSL; GE; GM; MS; FOV; Quantitative MRI; Synthetic images; PD; RF; Multiple sclerosis (MS); DTI; RP
• ISSN: 0730-725X; 1873-5894; 1873-5894
• DOI: 10.1016/j.mri.2019.05.013

Structural cerebral MRI analysis in patients with neurological diseases usually requires T1-weighted datasets for tissue segmentation. For this purpose, synthetic T1-weighted images which are constructed from quantitative maps of the underlying tissue parameters such as the T1 relaxation time and the proton density (PD) may provide advantages over conventional datasets. However, in some cases synthetic images may suffer from specific artifacts, hampering accurate tissue segmentation. The goal was to improve a previously described method for the calculation of synthetic magnetization-prepared rapid gradient-echo (MP-RAGE) datasets from quantitative T1 and PD maps. Improvements comprise a B0-correction for the water-selective excitation pulses employed in T1-mapping and the use of T1-based pseudo-PD maps. Synthetic T1-weighted MP-RAGE datasets were calculated, using the standard and the improved algorithm, for 10 patients with focal epilepsy (caused by focal cortical dysplasia in 9), 10 patients with multiple sclerosis and 10 healthy control subjects and segmented with the Freesurfer toolbox. Visual inspection disclosed that segmentation of the standard synthetic datasets was inaccurate in 6 out of 10 patients with epilepsy, 7 out of 10 patients with multiple sclerosis and 7 out of 10 healthy control subjects, while the improved synthetic datasets resulted in adequate segmentation outcomes in the majority of cases. Only for one patient with multiple sclerosis and one with epilepsy, segmentation in basal temporal regions was not sufficient. Furthermore, data based on the standard algorithm showed strong signal non-uniformities in basal regions. This effect was not present in the improved synthetic datasets.