Spectroscopic analysis of AgI-DNA complex
It has recently been reoprted that C-C mismatches were able to recognize AgI specifically, and form AgI-mediated cytosine-cytosine base pairs (C-AgI-C pair). In this study, we explored DNA sequences, which are appropriate for structural studies of this new type of metal-mediated base pairs. For this...
Saved in:
| Published in | Nucleic Acids Symposium Series Vol. 50; no. 1; pp. 199 - 200 |
|---|---|
| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Oxford University Press
01.11.2006
|
| Subjects | |
| Online Access | Get full text |
| ISSN | 0261-3166 1746-8272 1746-8272 |
| DOI | 10.1093/nass/nrl099 |
Cover
| Abstract | It has recently been reoprted that C-C mismatches were able to recognize AgI specifically, and form AgI-mediated cytosine-cytosine base pairs (C-AgI-C pair). In this study, we explored DNA sequences, which are appropriate for structural studies of this new type of metal-mediated base pairs. For this experiments, we synthesized four kinds of DNA duplexes including a single C-C mismatch. By using UV spectra, we performed titration experiments of DNA duplexes with AgNO3. Within the sequences we tested, it was found that the DNA duplex: 5′-CGCGCGTCC-3′ • 5′-GGACCCGCG-3′ showed 1:1 complexation of this DNA duplex and AgI. In addition, a DNA duplex: 5′-TAAATCTAATA-3′ • 5′-TATTACATTTA-3′ also exhibited a similar character. Therefore, these two DNA duplexes are interesting candidates for structural analyses. |
|---|---|
| AbstractList | It has recently been reoprted that C-C mismatches were able to recognize AgI specifically, and form AgI-mediated cytosine-cytosine base pairs (C-AgI-C pair). In this study, we explored DNA sequences, which are appropriate for structural studies of this new type of metal-mediated base pairs. For this experiments, we synthesized four kinds of DNA duplexes including a single C-C mismatch. By using UV spectra, we performed titration experiments of DNA duplexes with AgNO3. Within the sequences we tested, it was found that the DNA duplex: 5′-CGCGCGTCC-3′ • 5′-GGACCCGCG-3′ showed 1:1 complexation of this DNA duplex and AgI. In addition, a DNA duplex: 5′-TAAATCTAATA-3′ • 5′-TATTACATTTA-3′ also exhibited a similar character. Therefore, these two DNA duplexes are interesting candidates for structural analyses. It has recently been reported that C-C mismatches were able to recognize Ag(I) specifically, and form Ag(I)-mediated cytosine-cytosine base pairs (C-Ag(I)-C pair). In this study, we explored DNA sequences, which are appropriate for structural studies of this new type of metal-mediated base pairs. For this experiments, we synthesized four kinds of DNA duplexes including a single C-C mismatch. By using UV spectra, we performed titration experiments of DNA duplexes with AgNO(3). Within the sequences we tested, it was found that the DNA duplex: 5'-CGCGCGTCC-3' x 5'-GGACCCGCG-3' showed 1:1 complexation of this DNA duplex and Ag(I). In addition, a DNA duplex: 5'-TAAATCTAATA-3' x 5'-TATTACATTTA-3' also exhibited a similar character. Therefore, these two DNA duplexes are interesting candidates for structural analyses. It has recently been reported that C-C mismatches were able to recognize Ag(I) specifically, and form Ag(I)-mediated cytosine-cytosine base pairs (C-Ag(I)-C pair). In this study, we explored DNA sequences, which are appropriate for structural studies of this new type of metal-mediated base pairs. For this experiments, we synthesized four kinds of DNA duplexes including a single C-C mismatch. By using UV spectra, we performed titration experiments of DNA duplexes with AgNO(3). Within the sequences we tested, it was found that the DNA duplex: 5'-CGCGCGTCC-3' x 5'-GGACCCGCG-3' showed 1:1 complexation of this DNA duplex and Ag(I). In addition, a DNA duplex: 5'-TAAATCTAATA-3' x 5'-TATTACATTTA-3' also exhibited a similar character. Therefore, these two DNA duplexes are interesting candidates for structural analyses.It has recently been reported that C-C mismatches were able to recognize Ag(I) specifically, and form Ag(I)-mediated cytosine-cytosine base pairs (C-Ag(I)-C pair). In this study, we explored DNA sequences, which are appropriate for structural studies of this new type of metal-mediated base pairs. For this experiments, we synthesized four kinds of DNA duplexes including a single C-C mismatch. By using UV spectra, we performed titration experiments of DNA duplexes with AgNO(3). Within the sequences we tested, it was found that the DNA duplex: 5'-CGCGCGTCC-3' x 5'-GGACCCGCG-3' showed 1:1 complexation of this DNA duplex and Ag(I). In addition, a DNA duplex: 5'-TAAATCTAATA-3' x 5'-TATTACATTTA-3' also exhibited a similar character. Therefore, these two DNA duplexes are interesting candidates for structural analyses. |
| Author | Oda, Shuji Komuro, Tomoyuki Tanaka, Yoshiyuki Ono, Akira Kondo, Yoshinori |
| Author_xml | – sequence: 1 givenname: Shuji surname: Oda fullname: Oda, Shuji organization: 1Graduate School of Pharmaceutical Sciences Tohoku University, Aobayama, Aoba-ku, Sendai 980-8578, Japan, 2Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama 221-8686, Japan – sequence: 2 givenname: Tomoyuki surname: Komuro fullname: Komuro, Tomoyuki organization: 1Graduate School of Pharmaceutical Sciences Tohoku University, Aobayama, Aoba-ku, Sendai 980-8578, Japan, 2Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama 221-8686, Japan – sequence: 3 givenname: Yoshinori surname: Kondo fullname: Kondo, Yoshinori organization: 1Graduate School of Pharmaceutical Sciences Tohoku University, Aobayama, Aoba-ku, Sendai 980-8578, Japan, 2Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama 221-8686, Japan – sequence: 4 givenname: Akira surname: Ono fullname: Ono, Akira organization: 1Graduate School of Pharmaceutical Sciences Tohoku University, Aobayama, Aoba-ku, Sendai 980-8578, Japan, 2Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama 221-8686, Japan – sequence: 5 givenname: Yoshiyuki surname: Tanaka fullname: Tanaka, Yoshiyuki organization: 1Graduate School of Pharmaceutical Sciences Tohoku University, Aobayama, Aoba-ku, Sendai 980-8578, Japan, 2Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama 221-8686, Japan |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/17150886$$D View this record in MEDLINE/PubMed |
| BookMark | eNp90E1Lw0AQBuBFKrbWnrxLToJI7Gw22Y9jqV-Fogf1vGy2sxJJsjHbgP33pqTSm3OZy8MM73tORrWvkZBLCncUFJvXJoR53Zag1AmZUJHyWCYiGZEJJJzGjHI-JrMQvqCfFEAocUbGVNAMpOQTcvPWoN22PljfFDYytSl3oQiRd9HicxXfvywi66umxJ8LcupMGXB22FPy8fjwvnyO169Pq-ViHdtEpSq2wmUoDc-lsCazDHMAhgwNoMxyJiBjlhnLEy5S6axUQLONEyhMphwKwabkerjbtP67w7DVVREslqWp0XdBc5kwJij08OoAu7zCjW7aojLtTv-F68HtAGyfL7TojgT0vj29b08P7R3_-q75F_4CM_BuSw |
| ContentType | Journal Article |
| Copyright | 2006 Oxford University Press 2006 |
| Copyright_xml | – notice: 2006 Oxford University Press 2006 |
| DBID | AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 |
| DOI | 10.1093/nass/nrl099 |
| DatabaseName | CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic |
| DatabaseTitleList | MEDLINE MEDLINE - Academic |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Anatomy & Physiology |
| DocumentTitleAlternate | Thirty-third Symposium on Nucleic Acids Chemistry |
| EISSN | 1746-8272 |
| EndPage | 200 |
| ExternalDocumentID | 17150886 10_1093_nass_nrl099 10.1093/nass/nrl099 |
| Genre | Journal Article |
| GroupedDBID | -~X .GJ 0R~ 123 18M 1TH 2WC 3O- 4.4 5RE 70E AAMVS AAOGV AAPXW AAVAP ABPTD ABQLI ABXVV ACGFS ADBBV ADHZD AENZO AFFNX AFULF ALMA_UNASSIGNED_HOLDINGS ALUQC BAWUL BAYMD C1A CIDKT CS3 DIK D~K E3Z EJD F5P GX1 H13 HH5 IH2 KQ8 KSI OAWHX OJQWA OK1 PEELM RD5 ROX RXO TOX TR2 WG7 WOQ X7H ZKX ~91 AAYXX ABEJV ABGNP AMNDL CITATION --- 53G 5VS CGR CUY CVF EBS ECM EIF NPM ~S- 7X8 |
| ID | FETCH-LOGICAL-c2949-c7f5e8a6b87ca5c3eb003e3ea0e85b37053c3ac626748fc89015df7e7a59fe773 |
| IEDL.DBID | TOX |
| ISSN | 0261-3166 1746-8272 |
| IngestDate | Thu Jul 10 22:34:26 EDT 2025 Thu Nov 24 21:50:43 EST 2022 Tue Jul 01 00:52:56 EDT 2025 Wed Aug 28 03:19:47 EDT 2024 |
| IsDoiOpenAccess | false |
| IsOpenAccess | true |
| IsPeerReviewed | false |
| IsScholarly | true |
| Issue | 1 |
| Language | English |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c2949-c7f5e8a6b87ca5c3eb003e3ea0e85b37053c3ac626748fc89015df7e7a59fe773 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| OpenAccessLink | https://academic.oup.com/nass/article-pdf/50/1/199/4161436/nrl099.pdf |
| PMID | 17150886 |
| PQID | 68233710 |
| PQPubID | 23479 |
| PageCount | 2 |
| ParticipantIDs | proquest_miscellaneous_68233710 pubmed_primary_17150886 crossref_primary_10_1093_nass_nrl099 oup_primary_10_1093_nass_nrl099 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2006-November |
| PublicationDateYYYYMMDD | 2006-11-01 |
| PublicationDate_xml | – month: 11 year: 2006 text: 2006-November |
| PublicationDecade | 2000 |
| PublicationPlace | England |
| PublicationPlace_xml | – name: England |
| PublicationTitle | Nucleic Acids Symposium Series |
| PublicationTitleAbbrev | Nucleic Acids Symp Ser |
| PublicationTitleAlternate | Nucleic Acids Symp Ser (Oxf) |
| PublicationYear | 2006 |
| Publisher | Oxford University Press |
| Publisher_xml | – name: Oxford University Press |
| SSID | ssj0000400797 ssj0036588 |
| Score | 1.6162504 |
| Snippet | It has recently been reoprted that C-C mismatches were able to recognize AgI specifically, and form AgI-mediated cytosine-cytosine base pairs (C-AgI-C pair).... It has recently been reported that C-C mismatches were able to recognize Ag(I) specifically, and form Ag(I)-mediated cytosine-cytosine base pairs (C-Ag(I)-C... |
| SourceID | proquest pubmed crossref oup |
| SourceType | Aggregation Database Index Database Publisher |
| StartPage | 199 |
| SubjectTerms | Base Pair Mismatch Cytosine - chemistry DNA - chemistry Silver - chemistry Spectrophotometry, Ultraviolet |
| Title | Spectroscopic analysis of AgI-DNA complex |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/17150886 https://www.proquest.com/docview/68233710 |
| Volume | 50 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwhV1JS8NAFB7EkxdR61KXOocieBia5iWzHINaWsV6aaG3MDOdEUHT0gX03zszSStVoffwDl9e8n1vR6gZrkWnWhMRKUoSoBFRMZck0qBkrAXTYRPTc592h8njKB1VDbLzf0r4AlqFU5GtYvbutIz71Tr69e48eBmtUyneD5lYx1ngSJWvUyttSquxvF-2NohoY7jtj8YMXNM5QPuVSMRZ-VYP0Y4pjlAtK1yA_PGFb3Bo2wz58Bq69RfkF34n5WT6prGslozgicXZa4_c9zMc2sbN5zEadh4Gd11S3T8gOhaJIJrZ1HBJFWdaphr8mR8wYGRkeKqAue9Hg9QuJGEJt5p7ah9bZphMhTWMwQnaLSaFOUPYcVA0Bm4FtSxJUpBAZTuOjEpEO9bK1lFzBUY-Lddc5GV5GnKPWV5iVkfXDqgtT6xAzJ2j-uqDLMxkOc8pjwGcnqmj0xLbHzPML6Xn9Hyr9Qu0F1IgYRbwEu0uZktz5UTBQjWcHO49NYJjfAOAs7H2 |
| linkProvider | Oxford University Press |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Spectroscopic+analysis+of+AgI-DNA+complex&rft.jtitle=Nucleic+acids+symposium+series+%282004%29&rft.au=Oda%2C+Shuji&rft.au=Komuro%2C+Tomoyuki&rft.au=Kondo%2C+Yoshinori&rft.au=Ono%2C+Akira&rft.date=2006-11-01&rft.eissn=1746-8272&rft.issue=50&rft.spage=199&rft_id=info:doi/10.1093%2Fnass%2Fnrl099&rft_id=info%3Apmid%2F17150886&rft.externalDocID=17150886 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0261-3166&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0261-3166&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0261-3166&client=summon |