Color-neutral and reversible tissue transparency enables longitudinal deep-tissue imaging in live mice

• Published in: bioRxiv
• Main Authors: Keck, Carl H C, Schmidt, Elizabeth L, Roth, Richard H, Floyd, Brendan M, Tsai, Andy P, Garcia, Hassler B, Cui, Miao, Chen, Xiaoyu, Wang, Chonghe, Park, Andrew, Zhao, Su, Liao, Pinyu A, Casey, Kerriann M, Reineking, Wencke, Cai, Sa, Zhang, Ling-Yi, Yang, Qianru, Yuan, Lei, Baghdasaryan, Ani, Lopez, Eduardo R, Cooper, Lauren, Cui, Han, Esquivel, Daniel, Brinson, Kenneth, Chen, Xiaoke, Wyss-Coray, Tony, Coleman, Todd P, Brongersma, Mark L, Bertozzi, Carolyn R, Wang, Gordon X, Ding, Jun B, Hong, Guosong
• Format: Journal Article Paper
• Language: English
• Published: United States Cold Spring Harbor Laboratory Press 27.02.2025; Cold Spring Harbor Laboratory
• Edition: 1.1
• Subjects: Bioengineering; Fluorophores; Light scattering; Neuroimaging; Photons; Structure-function relationships; Yellow fluorescent protein; deep tissue imaging; Minor: Applied Physical Sciences; two-photon microscopy; Kramers-Kronig relations; Major: Physical Sciences; Optical transparency
• ISSN: 2692-8205; 2692-8205
• DOI: 10.1101/2025.02.20.639185

Light scattering in biological tissue presents a significant challenge for deep imaging. Our previous work demonstrated the ability to achieve optical transparency in live mice using intensely absorbing dye molecules, which created transparency in the red spectrum while blocking shorter-wavelength photons. In this paper, we extend this capability to achieve optical transparency across the entire visible spectrum by employing molecules with strong absorption in the ultraviolet spectrum and sharp absorption edges that rapidly decline upon entering the visible spectrum. This new color-neutral and reversible tissue transparency method enables optical transparency for imaging commonly used fluorophores in the green and yellow spectra. Notably, this approach facilitates tissue transparency for structural and functional imaging of the live mouse brain labeled with yellow fluorescent protein and GCaMP through the scalp and skull. We show that this method enables longitudinal imaging of the same brain regions in awake mice over multiple days during development. Histological analyses of the skin and systemic toxicology studies indicate minimal acute or chronic damage to the skin or body using this approach. This color-neutral and reversible tissue transparency technique opens new opportunities for noninvasive deep-tissue optical imaging, enabling long-term visualization of cellular structures and dynamic activity with high spatiotemporal resolution and chronic tracking capabilities.