A fijivirus major viroplasm protein shows RNA-stimulated ATPase activity by adopting pentameric and hexameric assemblies of dimers

• Published in: bioRxiv
• Main Authors: Llauger, Gabriela, Melero, Roberto, Monti, Demian, Sycz, Gabriela, Huck-Iriart, Cristian, Cerutti, Maria L, Klinke, Sebastian, Mikkelsen, Evelyn, Tijman, Ariel, Arranz, Rocio, Alfonso, Victoria, Arellano, Sofia M, Goldbaum, Fernando A, Sterckx, Yann Gj, Jose-Maria Carazo, Kaufman, Sergio B, Dans, Pablo D, Mariana Del Vas, Otero, Lisandro H
• Format: Paper
• Language: English
• Published: Cold Spring Harbor Cold Spring Harbor Laboratory Press 17.04.2022; Cold Spring Harbor Laboratory
• Edition: 1.1
• Subjects: Adenosine triphosphatase; Allosteric properties; Binding sites; Biochemistry; Computer applications; Crop diseases; Hexamers; Proteasomes; Proteins; Ribonucleic acid; RNA; Viroplasm; protein-nucleic acid interaction; protein structure; X-ray crystallography; molecular dynamics simulations; reovirus; ATPase; RNA binding protein; Plant virus; double‐stranded RNA virus; viroplasm; small-angle X-ray scattering; cryo-electron microscopy
• ISSN: 2692-8205; 2692-8205
• DOI: 10.1101/2022.04.16.488468

The fijivirus Mal de R&iacuteo Cuarto virus (MRCV) causes a devastating maize disease. Its non-structural protein P9-1, which shows ATPase and RNA binding activities, is the major component of the intracellular viroplasm where virus replication takes place. Herein, we established that the 24 C-terminal residues (C-arm) of P9-1 are required for the formation of viroplasm-like structures (VLS) in vivo and for the protein multimerization in vitro. Employing an integrative structural approach, we found that the C-arm is dispensable for P9-1 dimer assembly, but essential for the formation of doughnut-shaped pentamers and hexamers of dimers (decamers and dodecamers). Both assemblies, larger than those reported for other reoviruses, contain disordered loops oriented towards the inner pore of the structures, where RNA binding sites and conditional proteasome-mediated degradation signals (PEST) were predicted. In vitro assays demonstrated that ssRNA binding is favored towards P9-1 (do)decamers over the dimeric ΔC-arm version. In addition, although both P9-1 and P9-1ΔC-arm catalyzed the hydrolysis of ATP with similar activity values, an RNA-stimulated ATPase activity was only observed in the full-length protein, indicating a C-arm-mediated interaction between the ATP catalytic site and the allosteric RNA binding sites in the (do)decameric assemblies. Computational studies revealed a stronger preference of phosphate moieties to the decamer in the pore and the C-arm regions, suggesting that the allosteric communication between ATP and RNA binding sites is favored with this protein arrangement. Overall, our work reveals the structural versatility of a major viroplasm protein providing unprecedented insights into fijivirus viroplasm assembly and function and establishes the structural basis for the development of antiviral strategies against the Mal de R&iacuteo Cuarto crop disease. Competing Interest Statement The authors have declared no competing interest.