Optimization of N‑Benzoylindazole Derivatives as Inhibitors of Human Neutrophil Elastase

• Published in: Journal of medicinal chemistry Vol. 56; no. 15; pp. 6259 - 6272
• Main Authors: Crocetti, Letizia, Schepetkin, Igor A, Cilibrizzi, Agostino, Graziano, Alessia, Vergelli, Claudia, Giomi, Donatella, Khlebnikov, Andrei I, Quinn, Mark T, Giovannoni, Maria Paola
• Format: Journal Article
• Language: English
• Published: WASHINGTON American Chemical Society 08.08.2013; Amer Chemical Soc
• Subjects: Benzene Derivatives - chemical synthesis; Benzene Derivatives - chemistry; Benzoates - chemical synthesis; Benzoates - chemistry; Chemistry, Medicinal; Drug Stability; Humans; Hydrolysis; Indazoles - chemical synthesis; Indazoles - chemistry; Kinetics; Leukocyte Elastase - antagonists & inhibitors; Leukocyte Elastase - chemistry; Life Sciences & Biomedicine; Molecular Docking Simulation; Pharmacology & Pharmacy; Science & Technology; Structure-Activity Relationship; OBSTRUCTIVE PULMONARY-DISEASE; COMPLEX; SERINE PROTEASES; MECHANISM; RESOLUTION; BENZOYLPYRAZOLES; ACUTE LUNG INJURY; AIRWAY-OBSTRUCTION; CYSTIC-FIBROSIS; EPIDEMIOLOGY
• ISSN: 0022-2623; 1520-4804; 1520-4804
• DOI: 10.1021/jm400742j

Human neutrophil elastase (HNE) is an important therapeutic target for treatment of pulmonary diseases. Previously, we identified novel N-benzoylindazole derivatives as potent, competitive, and pseudoirreversible HNE inhibitors. Here, we report further development of these inhibitors with improved potency, protease selectivity, and stability compared to our previous leads. Introduction of a variety of substituents at position 5 of the indazole resulted in the potent inhibitor 20f (IC50 ∼10 nM) and modifications at position 3 resulted the most potent compound in this series, the 3-CN derivative 5b (IC50 = 7 nM); both derivatives demonstrated good stability and specificity for HNE versus other serine proteases. Molecular docking of selected N-benzoylindazoles into the HNE binding domain suggested that inhibitory activity depended on geometry of the ligand–enzyme complexes. Indeed, the ability of a ligand to form a Michaelis complex and favorable conditions for proton transfer between Hys57, Asp102, and Ser195 both affected activity.