Variovorax terrae sp. nov. Isolated from Soil with Potential Antioxidant Activity
A white-pigmented, non-motile, gram-negative, and rod-shaped bacterium, designated CYS-02 T , was isolated from soil sampled at Suwon, Gyeonggi-do, Republic of Korea. Cells were strictly aerobic, grew optimally at 20-28℃ and hydrolyzed Tween 40. Phylogenetic analysis based on 16S rRNA gene sequence...
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Published in | Journal of microbiology and biotechnology Vol. 32; no. 7; pp. 855 - 861 |
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Main Authors | , |
Format | Journal Article |
Language | Korean |
Published |
한국미생물생명공학회
31.07.2022
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Subjects | |
Online Access | Get full text |
ISSN | 1017-7825 1738-8872 |
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Abstract | A white-pigmented, non-motile, gram-negative, and rod-shaped bacterium, designated CYS-02 T , was isolated from soil sampled at Suwon, Gyeonggi-do, Republic of Korea. Cells were strictly aerobic, grew optimally at 20-28℃ and hydrolyzed Tween 40. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CYS-02 T formed a lineage within the family Comamonadaceae and clustered as members of the genus Variovorax. The closest members were Variovorax guangxiensis DSM 27352T (98.6% sequence similarity), Variovorax paradoxus NBRC 15149 T (98.5%), and Variovorax gossypii JM-310 T (98.3%). The principal respiratory quinone was Q-8 and the major polar lipids contain phosphatidylethanolamine (PE), phosphatidylethanolamine (PG), and diphosphatidylglycerol (DPG). The predominant cellular fatty acids were C 16:0 , summed feature 3 (C 16:1 ω7c and/or C 16:1 ω6c) and summed feature 8 (C 18:1 ω7c and/or C 18:1 ω6c). The DNA GC content was 67.7 mol%. The ANI and dDDH values between strain CYS-02 T and the closest members in the genus Variovorax were ≤ 79.0 and 22.4%, respectively, and the AAI and POCP values between CYS-02 T and the other related species in the family Comamonadaceae were > 70% and > 50%, respectively. The genome of strain CYS-02 T showed a putative terpene biosynthetic cluster responsible for antioxidant activity which was supported by DPPH radical scavenging activity test. Based on genomic, phenotypic and chemotaxonomic analyses, strain CYS-02 T was classified into a novel species in the genus Variovorax, for which the name Variovorax terrae sp. nov., has been proposed. The type strain is CYS-02 T (= KACC 22656 T = NBRC 00115645 T ). |
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AbstractList | A white-pigmented, non-motile, gram-negative, and rod-shaped bacterium, designated CYS-02 T , was isolated from soil sampled at Suwon, Gyeonggi-do, Republic of Korea. Cells were strictly aerobic, grew optimally at 20-28℃ and hydrolyzed Tween 40. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CYS-02 T formed a lineage within the family Comamonadaceae and clustered as members of the genus Variovorax. The closest members were Variovorax guangxiensis DSM 27352T (98.6% sequence similarity), Variovorax paradoxus NBRC 15149 T (98.5%), and Variovorax gossypii JM-310 T (98.3%). The principal respiratory quinone was Q-8 and the major polar lipids contain phosphatidylethanolamine (PE), phosphatidylethanolamine (PG), and diphosphatidylglycerol (DPG). The predominant cellular fatty acids were C 16:0 , summed feature 3 (C 16:1 ω7c and/or C 16:1 ω6c) and summed feature 8 (C 18:1 ω7c and/or C 18:1 ω6c). The DNA GC content was 67.7 mol%. The ANI and dDDH values between strain CYS-02 T and the closest members in the genus Variovorax were ≤ 79.0 and 22.4%, respectively, and the AAI and POCP values between CYS-02 T and the other related species in the family Comamonadaceae were > 70% and > 50%, respectively. The genome of strain CYS-02 T showed a putative terpene biosynthetic cluster responsible for antioxidant activity which was supported by DPPH radical scavenging activity test. Based on genomic, phenotypic and chemotaxonomic analyses, strain CYS-02 T was classified into a novel species in the genus Variovorax, for which the name Variovorax terrae sp. nov., has been proposed. The type strain is CYS-02 T (= KACC 22656 T = NBRC 00115645 T ). A white-pigmented, non-motile, gram-negative, and rod-shaped bacterium, designated CYS-02T, was isolated from soil sampled at Suwon, Gyeonggi-do, Republic of Korea. Cells were strictly aerobic, grew optimally at 20-28℃ and hydrolyzed Tween 40. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CYS-02T formed a lineage within the family Comamonadaceae and clustered as members of the genus Variovorax. The closest members were Variovorax guangxiensis DSM 27352T (98.6% sequence similarity), Variovorax paradoxus NBRC 15149T (98.5%), and Variovorax gossypii JM-310T (98.3%). The principal respiratory quinone was Q-8 and the major polar lipids contain phosphatidylethanolamine (PE), phosphatidylethanolamine (PG), and diphosphatidylglycerol (DPG). The predominant cellular fatty acids were C16:0, summed feature 3 (C16:1ω7c and/or C16:1ω6c) and summed feature 8 (C18:1ω7c and/or C18:1ω6c). The DNA GC content was 67.7 mol%. The ANI and dDDH values between strain CYS-02T and the closest members in the genus Variovorax were ≤ 79.0 and 22.4%, respectively, and the AAI and POCP values between CYS-02T and the other related species in the family Comamonadaceae were > 70% and > 50%, respectively. The genome of strain CYS-02T showed a putative terpene biosynthetic cluster responsible for antioxidant activity which was supported by DPPH radical scavenging activity test. Based on genomic, phenotypic and chemotaxonomic analyses, strain CYS-02T was classified into a novel species in the genus Variovorax, for which the name Variovorax terrae sp. nov., has been proposed. The type strain is CYS-02T (= KACC 22656T = NBRC 00115645T). |
Author | Chae Yung Woo Jaisoo Kim |
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Title | Variovorax terrae sp. nov. Isolated from Soil with Potential Antioxidant Activity |
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