A server-client version of “Genomatica” integrated genome information browser

We have been developing a new server-client version of “Genomatica”, an integrated data management and analysis tool for supporting genome sequencing projects. Now the client browser can work even with no local data file, retrieving the latest genome information maintained at the Genomatica server s...

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Published inGenome Informatics Vol. 5; pp. 202 - 203
Main Authors Mori, Hirotada, Ogasawara, Naotake, Yakoh, Takahiro, Akiyama, Yutaka
Format Journal Article
LanguageEnglish
Published Japanese Society for Bioinformatics 1994
日本バイオインフォマティクス学会
Online AccessGet full text
ISSN0919-9454
2185-842X
DOI10.11234/gi1990.5.202

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Abstract We have been developing a new server-client version of “Genomatica”, an integrated data management and analysis tool for supporting genome sequencing projects. Now the client browser can work even with no local data file, retrieving the latest genome information maintained at the Genomatica server sites. The server-client communication is based on HTTP (HyperText Transfer Protocol). The previous version of Genomatica system [1] was designed for the use by expert information managers of a genome sequencing project. The old system always required a large amount of disk space on local machine for storing several files of whole genome data. New server-client version is upper-compatible to the previous system and it allows general users to access genome information files maintained at remote server sites. Location of each local or remote file can be customized at the system configuration menu using URL (Unified Resource Locator) representation. In order to improve response time, users may keep local copy of some basic data files, downloading from the Genomatica servers. Also users can overlay their private genome sequences and/or comments onto the public genome information supplied from the server. The system is running on Unix workstations with X11-Motif window environment. The client program and several E.coli and B.subtilis data files are available on the GenomeNet ftp server (ftp.genome.ad.jp).
AbstractList We have been developing a new server-client version of “Genomatica”, an integrated data management and analysis tool for supporting genome sequencing projects. Now the client browser can work even with no local data file, retrieving the latest genome information maintained at the Genomatica server sites. The server-client communication is based on HTTP (HyperText Transfer Protocol). The previous version of Genomatica system [1] was designed for the use by expert information managers of a genome sequencing project. The old system always required a large amount of disk space on local machine for storing several files of whole genome data. New server-client version is upper-compatible to the previous system and it allows general users to access genome information files maintained at remote server sites. Location of each local or remote file can be customized at the system configuration menu using URL (Unified Resource Locator) representation. In order to improve response time, users may keep local copy of some basic data files, downloading from the Genomatica servers. Also users can overlay their private genome sequences and/or comments onto the public genome information supplied from the server. The system is running on Unix workstations with X11-Motif window environment. The client program and several E.coli and B.subtilis data files are available on the GenomeNet ftp server (ftp.genome.ad.jp).
Author Ogasawara, Naotake
Akiyama, Yutaka
Mori, Hirotada
Yakoh, Takahiro
Author_FL 小笠原 直毅
矢向 高弘
秋山 泰
森 浩禎
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References [1] Y. Akiyama, H. Mori, S. Kuhara, N. Ogasawara, N. Miyajima, T. Furukawa, K. Sato, Y. Murakami, “Genomatica: an integrated data management and analysis tool for genome sequencing projects”, Proc. Genome Informatics Workshop IV, Universal Academy Press, pp.394-401, (1993).
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