Draft genome sequence of the rubber tree Hevea brasiliensis
Background Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Results Here, we report the draft genom...
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| Published in | BMC genomics Vol. 14; no. 1; p. 75 |
|---|---|
| Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
BioMed Central
02.02.2013
BioMed Central Ltd Springer Nature B.V Springer BMC |
| Subjects | |
| Online Access | Get full text |
| ISSN | 1471-2164 1471-2164 |
| DOI | 10.1186/1471-2164-14-75 |
Cover
| Abstract | Background
Hevea brasiliensis,
a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876.
Results
Here, we report the draft genome sequence of
H. brasiliensis
. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to
Hevea
. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified.
Conclusions
The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. |
|---|---|
| AbstractList | Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876.
Here, we report the draft genome sequence of H. brasiliensis. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified.
The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. Doc number: 75 Abstract Background: Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Results: Here, we report the draft genome sequence of H. brasiliensis . The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea . Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified. Conclusions: The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Here, we report the draft genome sequence of H. brasiliensis. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified. The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. Background: Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Results: Here, we report the draft genome sequence of H. brasiliensis. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified. Conclusions: The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. Abstract Background Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Results Here, we report the draft genome sequence of H. brasiliensis. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified. Conclusions The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. Background Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Results Here, we report the draft genome sequence of H. brasiliensis. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified. Conclusions The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. Keywords: Hevea brasiliensis, Euphorbiaceae, Natural rubber, Genome Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876.BACKGROUNDHevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876.Here, we report the draft genome sequence of H. brasiliensis. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified.RESULTSHere, we report the draft genome sequence of H. brasiliensis. The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified.The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber.CONCLUSIONSThe knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. Background Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Results Here, we report the draft genome sequence of H. brasiliensis . The assembly spans ~1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, ~78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea . Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified. Conclusions The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber. |
| ArticleNumber | 75 |
| Audience | Academic |
| Author | Misra, Biswapriya B Najimudin, Nazalan Young, Aaron G Lee, Ling Sze Yu, Qingyi Mchunu, Nokuthula P Khoo, Bee Feong Saito, Jennifer A Ng, Fui Ling Knudsen, Bjarne Usharraj, Abhilash O Rahman, Ahmad Yamin Abdul Feng, Yun Thottathil, Gincy P Jayasekaran, Kandakumar Teh, Beng Soon Hou, Shaobin Freitas, Tracey Allen K Dionne-Laporte, Alexandre Langston, Brennick J Tan, Hock Siew Aziz, Nurohaida Ab Chen, Rui Badai, Siti Suriawati Alam, Maqsudul Sakaff, Muhd Khairul Luqman Muhd Yuryev, Anton Wang, Lei Ong, Su Yean |
| AuthorAffiliation | 3 Advanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, Hawaii, USA 8 Department of Microbiology, University of Hawaii, Honolulu, Hawaii, USA 9 Current address: Centre of Excellence in Neuromics of Université de Montréal, Centre Hospitalier de l'Université de Montréal Research Center, Montréal, Québec, Canada 10 Current address: Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA 1 Centre for Chemical Biology, Universiti Sains Malaysia, Penang, Malaysia 2 TEDA School of Biological Sciences and Biotechnology, Nankai University, Tianjin, China 4 Ariadne Genomics Inc., Rockville, Maryland, USA 5 CLC bio, Aarhus, Denmark 6 Department of Biotechnology and Food Technology, Durban University of Technology, Durban, South Africa 7 AgriLife Research Center, Department of Plant Pathology and Microbiology, Texas A&M University System, Weslaco, Texas, USA |
| AuthorAffiliation_xml | – name: 3 Advanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, Hawaii, USA – name: 10 Current address: Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA – name: 7 AgriLife Research Center, Department of Plant Pathology and Microbiology, Texas A&M University System, Weslaco, Texas, USA – name: 1 Centre for Chemical Biology, Universiti Sains Malaysia, Penang, Malaysia – name: 5 CLC bio, Aarhus, Denmark – name: 6 Department of Biotechnology and Food Technology, Durban University of Technology, Durban, South Africa – name: 2 TEDA School of Biological Sciences and Biotechnology, Nankai University, Tianjin, China – name: 9 Current address: Centre of Excellence in Neuromics of Université de Montréal, Centre Hospitalier de l'Université de Montréal Research Center, Montréal, Québec, Canada – name: 8 Department of Microbiology, University of Hawaii, Honolulu, Hawaii, USA – name: 4 Ariadne Genomics Inc., Rockville, Maryland, USA |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/23375136$$D View this record in MEDLINE/PubMed https://www.osti.gov/servlets/purl/1626424$$D View this record in Osti.gov |
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| Snippet | Background
Hevea brasiliensis,
a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high... Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity,... Background Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high... Doc number: 75 Abstract Background: Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a... Background: Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high... Abstract Background Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with... |
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| SubjectTerms | Allergenicity Allergens - genetics Analysis Animal Genetics and Genomics BASIC BIOLOGICAL SCIENCES Binding sites Biomedical and Life Sciences Biosynthesis Biotechnology & Applied Microbiology Biotechnology industry Cloning Colleges & universities Disease resistance Disease Resistance - genetics Euphorbiaceae Evolution, Molecular F-Box Proteins - genetics Gene expression Genes Genetic aspects Genetics & Heredity Genome Genome, Plant - genetics Genomes Genomics Global economy Haploidy Hevea - genetics Hevea - immunology Hevea - metabolism Hevea brasiliensis International economic relations Latex Latex - metabolism Life Sciences Microarrays Microbial Genetics and Genomics Molecular Sequence Annotation Molecular weight Natural rubber Nucleotide sequence Phylogeny Plant Genetics and Genomics Plant genomics Plant Growth Regulators - genetics Polymers Proteomics Repeated DNA sequences Research Article Rubber Rubber - metabolism Rubber trees Sequence Analysis Signal Transduction - genetics Transcription Factors - genetics Trees Wood - metabolism |
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| Title | Draft genome sequence of the rubber tree Hevea brasiliensis |
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