The Community Simulator: A Python package for microbial ecology - Marsland, Robert; Cui, Wenping; Goldford, Joshua; Mehta, Pankaj (PloS one, 2020)
Keywords: Algorithms; Analysis; Biology and Life Sciences; Community ecology; Computational geometry; Computer and Information Sciences; Computer applications; Computer Simulation; Convexity; Dictionaries; Differential equations; Dynamics; Ecology; Ecology - methods; Ecology and Environmental Sciences; Ecosystems; Environmental conditions; Environmental quality; Equilibrium; Equilibrium states; Integration; Metabolism; Metabolites; Microbial activity; Microbiomes; Microbiota; Microorganisms; Numerical integration; Optimization; Ordinary differential equations; Performance enhancement; Phase transitions; Physical Sciences; Physics; Population; Population biology; Population Dynamics; Pythons; Reason; Research and Analysis Methods; Simulation; Software; United States--US; Massachusetts