A Generative Model for Measuring Latent Timing Structure in Motor Sequences

• Published in: PloS one Vol. 7; no. 7; p. e37616
• Main Authors: Glaze, Christopher M., Troyer, Todd W.
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 16.07.2012; Public Library of Science (PLoS)
• Subjects: Algorithms; Analysis; Animals; Biology; Birds; Circadian Rhythm; Circadian rhythms; Datasets; Decomposition; Error analysis; Likelihood Functions; Male; Mathematical models; Mathematics; Maximum likelihood estimates; Measurement; Models, Statistical; Monte Carlo Method; Motor Activity - physiology; Neuromodulation; Passeriformes - physiology; Singing - physiology; Song; Standard deviation; Statistical models; Studies; Syllables; Time Factors; Time measurement; Timing jitter; Variability; Vibration; Zebra finch
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0037616

Motor variability often reflects a mixture of different neural and peripheral sources operating over a range of timescales. We present a statistical model of sequence timing that can be used to measure three distinct components of timing variability: global tempo changes that are spread across the sequence, such as might stem from neuromodulatory sources with widespread influence; fast, uncorrelated timing noise, stemming from noisy components within the neural system; and timing jitter that does not alter the timing of subsequent elements, such as might be caused by variation in the motor periphery or by measurement error. In addition to quantifying the variability contributed by each of these latent factors in the data, the approach assigns maximum likelihood estimates of each factor on a trial-to-trial basis. We applied the model to adult zebra finch song, a temporally complex behavior with rich structure on multiple timescales. We find that individual song vocalizations (syllables) contain roughly equal amounts of variability in each of the three components while overall song length is dominated by global tempo changes. Across our sample of syllables, both global and independent variability scale with average length while timing jitter does not, a pattern consistent with the Wing and Kristofferson (1973) model of sequence timing. We also find significant day-to-day drift in all three timing sources, but a circadian pattern in tempo only. In tests using artificially generated data, the model successfully separates out the different components with small error. The approach provides a general framework for extracting distinct sources of timing variability within action sequences, and can be applied to neural and behavioral data from a wide array of systems.