Global biogeography of Alnus‐associated Frankia actinobacteria
Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus‐associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity...
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| Published in | The New phytologist Vol. 204; no. 4; pp. 979 - 988 |
|---|---|
| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Academic Press
01.12.2014
New Phytologist Trust Wiley Subscription Services, Inc |
| Subjects | |
| Online Access | Get full text |
| ISSN | 0028-646X 1469-8137 1469-8137 |
| DOI | 10.1111/nph.12962 |
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| Abstract | Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus‐associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 Frankia OTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of Frankia OTU‐based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross‐continental links over the Beringian land bridge. Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root‐associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. |
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| AbstractList | Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of
Alnus
‐associated actinobacteria belonging to the
Frankia alni
complex.
By determining a global sequence similarity threshold for the nitrogenase reductase (
nifH
) gene, we separated
Frankia
into operational taxonomic units (
OTU
s) and tested the relative effects of
Alnus
phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale.
Based on the optimal
nifH
gene sequence similarity threshold of 99.3%, we distinguished 43
Frankia
OTU
s from root systems of 22
Alnus
species on four continents. Host phylogeny was the main determinant of
Frankia
OTU
‐based community composition, but there was no effect on the phylogenetic structure of
Frankia
. Biogeographic analyses revealed the strongest cross‐continental links over the Beringian land bridge.
Despite the facultative symbiotic nature of
Frankia
, phylogenetic relations among
Alnus
species play a prominent role in structuring root‐associated
Frankia
communities and their biogeographic patterns. Our results suggest that
Alnus
species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. Summary Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus-associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 FrankiaOTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of FrankiaOTU-based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross-continental links over the Beringian land bridge. Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root-associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. * Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus-associated actinobacteria belonging to the Frankia alni complex. * By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. * Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 Frankia OTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of Frankia OTU-based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross-continental links over the Beringian land bridge. * Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root-associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus‐associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 Frankia OTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of Frankia OTU‐based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross‐continental links over the Beringian land bridge. Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root‐associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. Summary Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus‐associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 Frankia OTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of Frankia OTU‐based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross‐continental links over the Beringian land bridge. Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root‐associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus-associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 Frankia OTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of Frankia OTU-based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross-continental links over the Beringian land bridge. Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root-associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria.Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus-associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 Frankia OTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of Frankia OTU-based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross-continental links over the Beringian land bridge. Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root-associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global biogeographic community of Alnus-associated actinobacteria belonging to the Frankia alni complex. By determining a global sequence similarity threshold for the nitrogenase reductase (nifH) gene, we separated Frankia into operational taxonomic units (OTUs) and tested the relative effects of Alnus phylogeny, geographic relatedness, and climatic and edaphic variables on community composition at the global scale. Based on the optimal nifH gene sequence similarity threshold of 99.3%, we distinguished 43 Frankia OTUs from root systems of 22 Alnus species on four continents. Host phylogeny was the main determinant of Frankia OTU-based community composition, but there was no effect on the phylogenetic structure of Frankia. Biogeographic analyses revealed the strongest cross-continental links over the Beringian land bridge. Despite the facultative symbiotic nature of Frankia, phylogenetic relations among Alnus species play a prominent role in structuring root-associated Frankia communities and their biogeographic patterns. Our results suggest that Alnus species exert strong phylogenetically determined selection pressure on compatible Actinobacteria. |
| Author | Põlme, Sergei Bahram, Mohammad Tedersoo, Leho Kõljalg, Urmas |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/25124146$$D View this record in MEDLINE/PubMed |
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| Copyright | 2014 New Phytologist Trust 2014 The Authors. New Phytologist © 2014 New Phytologist Trust 2014 The Authors. New Phytologist © 2014 New Phytologist Trust. Copyright © 2014 New Phytologist Trust |
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| Keywords | Frankia alni complex phylogeny effect coevolution DNA barcoding alder (Alnus) sequence similarity threshold macroecology nitrogenase reductase (nifH) gene |
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| Snippet | Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global... Summary Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the... Summary Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the... * Macroecological patterns of microbes have received relatively little attention until recently. This study aimed to disentangle the determinants of the global... |
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| SubjectTerms | Actinobacteria alder (Alnus) Alnus Alnus - genetics Alnus - microbiology Biogeography Biological Evolution Biological taxonomies coevolution Community composition Community structure Composition DNA barcoding Edaphic factors Frankia Frankia - classification Frankia - genetics Frankia alni Frankia alni complex genes Geography Land bridges macroecology microorganisms NifH gene Nitrogenase Nitrogenase reductase nitrogenase reductase (nifH) gene nucleotide sequences Oxidoreductases - genetics Phylogenetics Phylogeny phylogeny effect Phylogeography Plants Reductases root systems Roots sequence homology sequence similarity threshold Sequencing Similarity Soil ecology Species Symbionts Symbiosis Symbiosis - genetics |
| Title | Global biogeography of Alnus‐associated Frankia actinobacteria |
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