An integer optimization algorithm for robust identification of non-linear gene regulatory networks - Chemmangattuvalappil, Nishanth; Task, Keith; Banerjee, Ipsita (BMC systems biology, 2012)
Keywords: Algorithms; Analysis; Bioinformatics; Biomedical and Life Sciences; Case studies; Cellular and Medical Topics; Computational Biology - methods; Computational Biology/Bioinformatics; Confidence intervals; DNA Repair; E coli; Escherichia coli; Escherichia coli - genetics; Gene expression; Gene Regulatory Networks; Genes; Genetic algorithms; Genetic research; Hypotheses; Life Sciences; Mathematical optimization; Methods; Models, Genetic; Noise; Noise control; Nonlinear Dynamics; Objective function; Ordinary differential equations; Physiological; Research Article; Reverse engineering; Simulation and Modeling; software and technology; Sparsity; Systems Biology; Time series; Topology; Transcriptome; Uncertainty; Iran; Robust network identification; Bootstrapping; Integer programming; Gene regulatory networks; Optimization algorithm; Non-linear dynamics; S-system