PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data - Hu, Xiaojun; Hurtado-Gonzales, Oscar P.; Adhikari, Bishwo N.; French-Monar, Ronald D.; Malapi, Martha; Foster, Joseph A.; McFarland, Clint D. (BMC bioinformatics, 2023)
Keywords: Agricultural commodities; Algorithms; Analysis; Annotations; Bacteria; Bioinformatics; Biomedical and Life Sciences; Classification; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Farming systems; Fungi; Genomes; Germplasm; Introduced plants; Life Sciences; Linux; Microarrays; Next-generation sequencing; Pathogen detection; Pathogens; Phytopathogen; Phytoplasma; Phytosanitary; Pipeline; Plant communities; Plant pathology; Plant viruses; Plant-pathogen relationships; Programming languages; Quality control; Quarantine; Ribonucleic acid; RNA; RNA sequencing; Software; Source code; Taxonomy; Viruses; Workflow; Workflow software; United States; RNA-seq; Phytosanitary; HTS; Quarantine; Pathogen detection; Phytopathogen; Bioinformatics; Pipeline