Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT - Elangovan, Aparna; Li, Yuan; Pires, Douglas E. V.; Davis, Melissa J.; Verspoor, Karin (BMC bioinformatics, 2022)
Keywords: Algorithms; Analysis; Annotations; Automation; BioBERT; Bioinformatics; Biomedical and Life Sciences; Calibration; Computational Biology/Bioinformatics; Computational linguistics; Computer Appl. in Life Sciences; Data Mining; Datasets; Deep learning; Distant supervision; Enzymes; Humans; Language processing; Life Sciences; Machine learning; Methods; Microarrays; Natural language interfaces; Natural language processing; Noise; Phosphorylation; Post-translation; Post-translational modification; Post-translational modifications; Predictions; Protein interaction; Protein Processing, Post-Translational; Protein-protein interaction; Protein-protein interactions; Proteins; PubMed; Supervision; Test sets; Translation; Uniqueness; Australia; Deep learning; Distant supervision; Natural language processing; Post-translational modifications; Protein-protein interaction; BioBERT