A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing - Hoang, Nam V.; Furtado, Agnelo; Mason, Patrick J.; Marquardt, Annelie; Kasirajan, Lakshmi; Thirugnanasambandam, Prathima P.; Botha, Frederik C.; Henry, Robert J. (BMC genomics, 2017)
Keywords: Algorithms; Alternative Splicing; Animal Genetics and Genomics; Assembly; Biomedical and Life Sciences; Datasets; De novo assembly; Developmental stages; Economic conditions; Economic importance; Error correction & detection; Expressed sequence tags; Expressed Sequence Tags - metabolism; Gene expression; Gene Expression Profiling; Gene sequencing; Genes; Genetic aspects; Genomes; Genomics; Genotypes; High-Throughput Nucleotide Sequencing; Hybrid assembly; Isoform sequencing; Isoforms; Leaves; Life Sciences; Microarrays; Microbial Genetics and Genomics; Molecular Sequence Annotation; Non-coding RNA; Plant Genetics and Genomics; Plant genomics; Plant tissues; Polyploid transcriptome; Polyploidy; Predictions; Properties; Proteins; Proteomics; Renewable energy; Representations; Research Article; Ribonucleic acid; RNA; RNA Isoforms - genetics; RNA, Messenger - genetics; Saccharum - genetics; Saccharum officinarum; Sequence Analysis, RNA; Sorghum; Sugarcane; Transcription; Transcriptome assembly; Transcriptomics; Transcriptome assembly; Isoform sequencing; assembly; Polyploid transcriptome; Sugarcane; Hybrid assembly; SUGIT database; De novo assembly