zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm - Sand, Andreas; Kristiansen, Martin; Pedersen, Christian NS; Mailund, Thomas (BMC bioinformatics, 2013)
Keywords: Algorithms; Analysis; Animals; Bioinformatics; Biomedical and Life Sciences; Computation; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Computer programs; Computer Simulation; Construction; Gorilla gorilla - genetics; Humans; Libraries; Life Sciences; Likelihood Functions; Markov analysis; Markov Chains; Markov processes; Mathematical models; Microarrays; Observational Studies as Topic; Pan troglodytes - genetics; Peptide Library; Phylogeny; Pongo - genetics; Preprocessing; Probability; Science; Sequence analysis (methods); Software; Time Factors; Alphabet Size; Forward Algorithm; Hide State; Input Sequence; Hide Markov Model