Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data - Sharov, Alexei A; Masui, Shinji; Sharova, Lioudmila V; Piao, Yulan; Aiba, Kazuhiro; Matoba, Ryo; Xin, Li; Niwa, Hitoshi; Ko, Minoru SH (BMC genomics, 2008)
Keywords: Algorithms; Analysis; Animal Genetics and Genomics; Animals; Binding Sites; Biomedical and Life Sciences; Chromatin; Chromatin Immunoprecipitation - methods; DNA binding proteins; DNA microarrays; DNA-Binding Proteins - genetics; DNA-Binding Proteins - metabolism; Embryonic Stem Cells - metabolism; Genetic aspects; Genome; Health aspects; HMGB Proteins - genetics; HMGB Proteins - metabolism; Homeodomain Proteins - genetics; Homeodomain Proteins - metabolism; Humans; Life Sciences; Mice; Microarrays; Microbial Genetics and Genomics; Nanog Homeobox Protein; Octamer Transcription Factor-3 - genetics; Octamer Transcription Factor-3 - metabolism; Oligonucleotide Array Sequence Analysis; Plant Genetics and Genomics; Proteomics; Research Article; SOXB1 Transcription Factors; Time Factors; Transcription Factors - genetics; Transcription Factors - metabolism; United States; False Discovery Rate; Trophoblast Stem Cell; Trophoblast Stem; Embryonic Stem Cell; ChIP Data