Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers

The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lack...

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Published inPloS one Vol. 13; no. 9; p. e0203866
Main Authors Viret, Alexiane, Tsaparis, Dimitris, Tsigenopoulos, Costas S., Berrebi, Patrick, Sabatini, Andrea, Arculeo, Marco, Fassatoui, Chiheb, Magoulas, Antonios, Marengo, Michel, Morales-Nin, Beatriz, Caill-Milly, Nathalie, Durieux, Eric D. H.
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 12.09.2018
Public Library of Science (PLoS)
Subjects
Animal behavior
Animal genetics
Aquaculture
Bayesian analysis
Biological markers
Biology and Life Sciences
Biotechnology
Commercial fishing
Connectivity
Conservation
Dentex dentex
Earth Sciences
Ecology
Ecology and Environmental Sciences
Endangered & extinct species
Fish
Fisheries
Fishing
Genetic aspects
Genetic diversity
Genetic structure
Genetics
Genomics
Life Sciences
Loci
Marine biology
Marine environment
Marine fish
Marine fishes
Markers
Microsatellites
Mitochondria
Oceans
Offshore structures
Population
Population (statistical)
Population genetics
Populations and Evolution
Research and Analysis Methods
Species
Statistical analysis
Statistical methods
Statistical tests
Wildlife conservation
Mediterranean Sea
Greece
Crete
United States > US
Atlantic Ocean
Italy
France
Spain
Polymerase chain reaction
Haplotypes
Atlantic Ocean
Phylogeography
Mitochondrial DNA
Marine fish
Mediterranean Sea
Population genetics
Online AccessGet full text
ISSN1932-6203
1932-6203
DOI10.1371/journal.pone.0203866

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Abstract The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lacking. Most samples were obtained from the Mediterranean Sea (17 sites) with an emphasis around Corsica (5 sites), plus one Atlantic Ocean site. This provided an opportunity to examine genetic structuring at local and broader scales to provide science based data for the management of fishing stocks in the region. Two mitochondrial regions were examined (D-loop and COI) along with eight microsatellite loci. The COI data was combined with publicly available sequences and demonstrated past misidentification of common dentex. All markers indicated the absence of population genetic structure from the Bay of Biscay to the eastern Mediterranean Sea. Bayesian approaches, as well as the statistical tests performed on the allelic frequencies from microsatellite loci, indicated low differentiation between samples; there was only a slight (p = 0.05) indication of isolation by distance. Common dentex is a marine fish species with a unique panmictic population in the Mediterranean and likely in the Atlantic Ocean as well.
AbstractList The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lacking. Most samples were obtained from the Mediterranean Sea (17 sites) with an emphasis around Corsica (5 sites), plus one Atlantic Ocean site. This provided an opportunity to examine genetic structuring at local and broader scales to provide science based data for the management of fishing stocks in the region. Two mitochondrial regions were examined (D-loop and COI) along with eight microsatellite loci. The COI data was combined with publicly available sequences and demonstrated past misidentification of common dentex. All markers indicated the absence of population genetic structure from the Bay of Biscay to the eastern Mediterranean Sea. Bayesian approaches, as well as the statistical tests performed on the allelic frequencies from microsatellite loci, indicated low differentiation between samples; there was only a slight (p = 0.05) indication of isolation by distance. Common dentex is a marine fish species with a unique panmictic population in the Mediterranean and likely in the Atlantic Ocean as well.The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lacking. Most samples were obtained from the Mediterranean Sea (17 sites) with an emphasis around Corsica (5 sites), plus one Atlantic Ocean site. This provided an opportunity to examine genetic structuring at local and broader scales to provide science based data for the management of fishing stocks in the region. Two mitochondrial regions were examined (D-loop and COI) along with eight microsatellite loci. The COI data was combined with publicly available sequences and demonstrated past misidentification of common dentex. All markers indicated the absence of population genetic structure from the Bay of Biscay to the eastern Mediterranean Sea. Bayesian approaches, as well as the statistical tests performed on the allelic frequencies from microsatellite loci, indicated low differentiation between samples; there was only a slight (p = 0.05) indication of isolation by distance. Common dentex is a marine fish species with a unique panmictic population in the Mediterranean and likely in the Atlantic Ocean as well.
The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lacking. Most samples were obtained from the Mediterranean Sea (17 sites) with an emphasis around Corsica (5 sites), plus one Atlantic Ocean site. This provided an opportunity to examine genetic structuring at local and broader scales to provide science based data for the management of fishing stocks in the region. Two mitochondrial regions were examined (D-loop and COI) along with eight microsatellite loci. The COI data was combined with publicly available sequences and demonstrated past misidentification of common dentex. All markers indicated the absence of population genetic structure from the Bay of Biscay to the eastern Mediterranean Sea. Bayesian approaches, as well as the statistical tests performed on the allelic frequencies from microsatellite loci, indicated low differentiation between samples; there was only a slight (p = 0.05) indication of isolation by distance. Common dentex is a marine fish species with a unique panmictic population in the Mediterranean and likely in the Atlantic Ocean as well.
The common dentex, Dentex dentex , is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an important species from an ecological, economic and conservation perspective, however critical information on its population genetic structure is lacking. Most samples were obtained from the Mediterranean Sea (17 sites) with an emphasis around Corsica (5 sites), plus one Atlantic Ocean site. This provided an opportunity to examine genetic structuring at local and broader scales to provide science based data for the management of fishing stocks in the region. Two mitochondrial regions were examined (D-loop and COI) along with eight microsatellite loci. The COI data was combined with publicly available sequences and demonstrated past misidentification of common dentex. All markers indicated the absence of population genetic structure from the Bay of Biscay to the eastern Mediterranean Sea. Bayesian approaches, as well as the statistical tests performed on the allelic frequencies from microsatellite loci, indicated low differentiation between samples; there was only a slight (p = 0.05) indication of isolation by distance. Common dentex is a marine fish species with a unique panmictic population in the Mediterranean and likely in the Atlantic Ocean as well.
Audience Academic
Author Marengo, Michel
Durieux, Eric D. H.
Berrebi, Patrick
Caill-Milly, Nathalie
Viret, Alexiane
Sabatini, Andrea
Tsaparis, Dimitris
Arculeo, Marco
Morales-Nin, Beatriz
Magoulas, Antonios
Tsigenopoulos, Costas S.
Fassatoui, Chiheb
AuthorAffiliation 2 Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research (HCMR), Thalassocosmos, Heraklion, Crete, Greece
3 University of Cagliari, Biologia Animale ed Ecologia, Cagliari, Italy
9 Ifremer, Laboratory Environnement Resources of Arcachon, UFR Sciences and Technics, 1 allée du Parc Montaury, Anglet, France
4 Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche, Università di Palermo, Palermo, Italy
National Cheng Kung University, TAIWAN
5 Institut National Agronomique de Tunisie, UR03AGRO1 Écosystèmes & Ressources Aquatiques, Tunisia
6 UMR 6134 CNRS-UCPP Sciences pour l’Environnement, Université de Corse Pasquale Paoli, Corte, France
7 UMS 3514, CNRS-UCPP Plateforme marine Stella Mare, Université de Corse Pasquale Paoli, Biguglia, France
1 ISEM, Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France
8 Department of Natural Resources, Mediterranean Institute for Advanced Studies (IMEDEA CSIC-UIB), Esporlas, Balearic Islands, Spai
AuthorAffiliation_xml – name: 8 Department of Natural Resources, Mediterranean Institute for Advanced Studies (IMEDEA CSIC-UIB), Esporlas, Balearic Islands, Spain
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/30208106$$D View this record in MEDLINE/PubMed
https://hal.umontpellier.fr/hal-03117680$$DView record in HAL
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ContentType Journal Article
Copyright COPYRIGHT 2018 Public Library of Science
2018 Viret et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Attribution
2018 Viret et al 2018 Viret et al
Copyright_xml – notice: COPYRIGHT 2018 Public Library of Science
– notice: 2018 Viret et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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IsDoiOpenAccess true
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Issue 9
Keywords Polymerase chain reaction
Haplotypes
Atlantic Ocean
Phylogeography
Mitochondrial DNA
Marine fish
Mediterranean Sea
Population genetics
Language English
License Attribution: http://creativecommons.org/licenses/by
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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content type line 14
content type line 23
Competing Interests: The authors have declared that no competing interests exist.
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Snippet The common dentex, Dentex dentex, is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an...
The common dentex, Dentex dentex , is a fish species which inhabits marine environments in the Mediterranean and Northeast Atlantic regions. This is an...
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SubjectTerms Animal behavior
Animal genetics
Aquaculture
Bayesian analysis
Biological markers
Biology and Life Sciences
Biotechnology
Commercial fishing
Connectivity
Conservation
Dentex dentex
Earth Sciences
Ecology
Ecology and Environmental Sciences
Endangered & extinct species
Fish
Fisheries
Fishing
Genetic aspects
Genetic diversity
Genetic structure
Genetics
Genomics
Life Sciences
Loci
Marine biology
Marine environment
Marine fish
Marine fishes
Markers
Microsatellites
Mitochondria
Oceans
Offshore structures
Population
Population (statistical)
Population genetics
Populations and Evolution
Research and Analysis Methods
Species
Statistical analysis
Statistical methods
Statistical tests
Wildlife conservation
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Title Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers
URI https://www.ncbi.nlm.nih.gov/pubmed/30208106
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https://pubmed.ncbi.nlm.nih.gov/PMC6135516
https://doaj.org/article/06a9620d62d948e38e822996b27aeb6c
http://dx.doi.org/10.1371/journal.pone.0203866
Volume 13
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