Implementing sequence-based antigenic distance calculation into immunological shape space model - Anderson, Christopher S.; Sangster, Mark Y.; Yang, Hongmei; Mariani, Thomas J.; Chaudhury, Sidhartha; Topham, David J. (BMC bioinformatics, 2020)
Keywords: Algorithms; Amino Acid Sequence; Analysis and modelling of complex systems; Antibodies, Viral - blood; Antibodies, Viral - immunology; Antigen-antibody reactions; Antigenic determinants; Antigenic distance; Antigenic sites; Antigens, Viral - chemistry; Antigens, Viral - immunology; B cells; Bioinformatics; Biomedical and Life Sciences; Comparative analysis; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Computer Simulation; Cross Reactions; Epidemics; Epitopes; Gillespie algorithm; Hemagglutinin; Hemagglutinin Glycoproteins, Influenza Virus - chemistry; Hemagglutinin Glycoproteins, Influenza Virus - immunology; Humans; Immunologic factors; Influenza A Virus, H1N1 Subtype - immunology; Influenza vaccines; Influenza Vaccines - immunology; Life Sciences; Medical research; Microarrays; Models, Immunological; Research Article; Shape space; Swine influenza; Vaccination; Shape space; Simulations; Hemagglutinin; Humoral immune system; Epitopes; Vaccines; H1N1; Gillespie algorithm; Stem; Computational immunology; Artificial immune systems; Influenza; 2009 pandemic; pH1N1; Antigenic distance; Stalk; HA; Antigenic sites