Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data - Greenwald, William W.; Li, He; Smith, Erin N.; Benaglio, Paola; Nariai, Naoki; Frazer, Kelly A. (BMC bioinformatics, 2017)
Keywords: Algorithms; Annotations; Arithmetic; B chromosome; Bedtools; Bins; Bioinformatics; Biomedical and Life Sciences; Chromatin; Chromatin - genetics; Chromatin - metabolism; Chromatin conformation capture; Chromatin Immunoprecipitation; Chromosome number; Chromosomes; Columns (process); Columns (structural); Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Computer programs; Confidence intervals; Conformation; Data analysis; Data processing; Data storage; Datasets; Differentiation; Ethics; Folding; Format; Gene expression; Gene mapping; Genetic Loci; Genomes; Genomics; Genomics - methods; Headers; Hi-CChIA-PET; High-Throughput Nucleotide Sequencing; Integration; Life Sciences; Loci; Mapping; Mathematical analysis; Mathematics; Metadata; Microarrays; Paired-genomic-loci; Peak; Pipelines; Segments; Sequence analysis (applications); Software; Sparsity; Stem cells; Tool suite; Hi-CChIA-PET; Genomic arithmetic; Chromatin conformation capture; Bedtools; Paired-genomic-loci; Peak; Tool suite