Regulatory network of miRNA on its target: coordination between transcriptional and post-transcriptional regulation of gene expression

MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs that participate in a majority of biological processes via regulating target gene expression. The post-transcriptional repression through miRNA seed region binding to 3′ UTR of target mRNA is considered as the canonical mode of miRNA-...

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Published inCellular and molecular life sciences : CMLS Vol. 76; no. 3; pp. 441 - 451
Main Authors Pu, Mengfan, Chen, Jing, Tao, Zhouteng, Miao, Lingling, Qi, Xinming, Wang, Yizheng, Ren, Jin
Format Journal Article
LanguageEnglish
Published Cham Springer International Publishing 01.02.2019
Springer Nature B.V
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Online AccessGet full text
ISSN1420-682X
1420-9071
1420-9071
DOI10.1007/s00018-018-2940-7

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Abstract MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs that participate in a majority of biological processes via regulating target gene expression. The post-transcriptional repression through miRNA seed region binding to 3′ UTR of target mRNA is considered as the canonical mode of miRNA-mediated gene regulation. However, emerging evidence suggests that other regulatory modes exist beyond the canonical mechanism. In particular, the function of intranuclear miRNA in gene transcriptional regulation is gradually revealed, with evidence showing their contribution to gene silencing or activating. Therefore, miRNA-mediated regulation of gene transcription not only expands our understanding of the molecular mechanism underlying miRNA regulatory function, but also provides new evidence to explain its ability in the sophisticated regulation of many bioprocesses. In this review, mechanisms of miRNA-mediated gene transcriptional and post-transcriptional regulation are summarized, and the synergistic effects among these actions which form a regulatory network of a miRNA on its target are particularly elaborated. With these discussions, we aim to emphasize the importance of miRNA regulatory network on target gene regulation and further highlight the potential application of the network mode in the achievement of a more effective and stable modulation of the target gene expression.
AbstractList MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs that participate in a majority of biological processes via regulating target gene expression. The post-transcriptional repression through miRNA seed region binding to 3′ UTR of target mRNA is considered as the canonical mode of miRNA-mediated gene regulation. However, emerging evidence suggests that other regulatory modes exist beyond the canonical mechanism. In particular, the function of intranuclear miRNA in gene transcriptional regulation is gradually revealed, with evidence showing their contribution to gene silencing or activating. Therefore, miRNA-mediated regulation of gene transcription not only expands our understanding of the molecular mechanism underlying miRNA regulatory function, but also provides new evidence to explain its ability in the sophisticated regulation of many bioprocesses. In this review, mechanisms of miRNA-mediated gene transcriptional and post-transcriptional regulation are summarized, and the synergistic effects among these actions which form a regulatory network of a miRNA on its target are particularly elaborated. With these discussions, we aim to emphasize the importance of miRNA regulatory network on target gene regulation and further highlight the potential application of the network mode in the achievement of a more effective and stable modulation of the target gene expression.
MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs that participate in a majority of biological processes via regulating target gene expression. The post-transcriptional repression through miRNA seed region binding to 3' UTR of target mRNA is considered as the canonical mode of miRNA-mediated gene regulation. However, emerging evidence suggests that other regulatory modes exist beyond the canonical mechanism. In particular, the function of intranuclear miRNA in gene transcriptional regulation is gradually revealed, with evidence showing their contribution to gene silencing or activating. Therefore, miRNA-mediated regulation of gene transcription not only expands our understanding of the molecular mechanism underlying miRNA regulatory function, but also provides new evidence to explain its ability in the sophisticated regulation of many bioprocesses. In this review, mechanisms of miRNA-mediated gene transcriptional and post-transcriptional regulation are summarized, and the synergistic effects among these actions which form a regulatory network of a miRNA on its target are particularly elaborated. With these discussions, we aim to emphasize the importance of miRNA regulatory network on target gene regulation and further highlight the potential application of the network mode in the achievement of a more effective and stable modulation of the target gene expression.MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs that participate in a majority of biological processes via regulating target gene expression. The post-transcriptional repression through miRNA seed region binding to 3' UTR of target mRNA is considered as the canonical mode of miRNA-mediated gene regulation. However, emerging evidence suggests that other regulatory modes exist beyond the canonical mechanism. In particular, the function of intranuclear miRNA in gene transcriptional regulation is gradually revealed, with evidence showing their contribution to gene silencing or activating. Therefore, miRNA-mediated regulation of gene transcription not only expands our understanding of the molecular mechanism underlying miRNA regulatory function, but also provides new evidence to explain its ability in the sophisticated regulation of many bioprocesses. In this review, mechanisms of miRNA-mediated gene transcriptional and post-transcriptional regulation are summarized, and the synergistic effects among these actions which form a regulatory network of a miRNA on its target are particularly elaborated. With these discussions, we aim to emphasize the importance of miRNA regulatory network on target gene regulation and further highlight the potential application of the network mode in the achievement of a more effective and stable modulation of the target gene expression.
Author Pu, Mengfan
Qi, Xinming
Tao, Zhouteng
Ren, Jin
Wang, Yizheng
Miao, Lingling
Chen, Jing
Author_xml – sequence: 1
  givenname: Mengfan
  surname: Pu
  fullname: Pu, Mengfan
  organization: Center for Drug Safety Evaluation and Research, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, School of Life Science and Technology, ShanghaiTech University
– sequence: 2
  givenname: Jing
  surname: Chen
  fullname: Chen, Jing
  organization: Center for Drug Safety Evaluation and Research, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences
– sequence: 3
  givenname: Zhouteng
  surname: Tao
  fullname: Tao, Zhouteng
  organization: Center for Drug Safety Evaluation and Research, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences
– sequence: 4
  givenname: Lingling
  surname: Miao
  fullname: Miao, Lingling
  organization: Center for Drug Safety Evaluation and Research, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences
– sequence: 5
  givenname: Xinming
  surname: Qi
  fullname: Qi, Xinming
  organization: Center for Drug Safety Evaluation and Research, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences
– sequence: 6
  givenname: Yizheng
  surname: Wang
  fullname: Wang, Yizheng
  organization: The Brain Science Center, Beijing Institute of Basic Medical Sciences
– sequence: 7
  givenname: Jin
  surname: Ren
  fullname: Ren, Jin
  email: jren@cdser.simm.ac.cn
  organization: Center for Drug Safety Evaluation and Research, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences
BackLink https://www.ncbi.nlm.nih.gov/pubmed/30374521$$D View this record in MEDLINE/PubMed
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Snippet MicroRNAs (miRNAs) are a class of endogenous small noncoding RNAs that participate in a majority of biological processes via regulating target gene expression....
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StartPage 441
SubjectTerms 3' Untranslated regions
Biochemistry
Biological activity
Biomedical and Life Sciences
Biomedicine
Cell Biology
Drug Delivery Systems
Gene expression
Gene Expression Regulation - genetics
Gene regulation
Gene Silencing
genes
Humans
Life Sciences
messenger RNA
microRNA
MicroRNAs
MicroRNAs - genetics
MicroRNAs - metabolism
miRNA
Molecular modelling
non-coding RNA
Post-transcription
Protein Processing, Post-Translational - genetics
Review
Ribonucleic acid
RNA
synergism
Synergistic effect
transcription (genetics)
Transcriptional Activation - genetics
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Title Regulatory network of miRNA on its target: coordination between transcriptional and post-transcriptional regulation of gene expression
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