DconnLoop: a deep learning model for predicting chromatin loops based on multi-source data integration - Wang, Junfeng; Cheng, Kuikui; Yan, Chaokun; Luo, Huimin; Luo, Junwei (BMC bioinformatics, 2025)
Keywords: Ablation; Algorithms; Binding sites; Binomial distribution; Bioinformatics; Biomedical and Life Sciences; Chromatin; Chromatin - chemistry; Chromatin - genetics; Chromatin Immunoprecipitation Sequencing; Chromatin loops; Clustering; Computational Biology - methods; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Computer vision; Data integration; Datasets; Decoders; Deep Learning; Density; DNA methylation; DNA sequencing; Electronic data processing; Epigenetics; Feature extraction; Feature integration; Gene expression; Gene regulation; Genomes; Genomics; Humans; Life Sciences; Machine learning; Methods; Microarrays; Multi-source data; Mutation; Neural networks; Nucleotide sequencing; Proteins; Regulatory mechanisms (biology); Software; Structure; Transcription factors; China; Deep learning; Feature integration; Chromatin loops; Multi-source data; Clustering