CacPred: a cascaded convolutional neural network for TF-DNA binding prediction - Zhang, Shuangquan; Ma, Anjun; Xie, Xuping; Lian, Zhichao; Wang, Yan (BMC genomics, 2025)
Keywords: Accuracy; Algorithms; Analysis; Animal Genetics and Genomics; Artificial neural networks; Binding; Binding Sites; Biomedical and Life Sciences; ChIP-seq; Chromatin; Chromatin Immunoprecipitation Sequencing; Computational Biology - methods; Convolutional Neural Networks; Correlation coefficient; Correlation coefficients; Datasets; Deep learning; Deoxyribonucleic acid; DNA; DNA - metabolism; DNA binding proteins; DNA sequencing; DNA-ligand interactions; Exonuclease; Gene expression; Gene sequencing; Genes; Genetic research; Immunoprecipitation; Life Sciences; Microarrays; Microbial Genetics and Genomics; Neural networks; Neural Networks, Computer; Nucleotide sequence; Nucleotide sequencing; Nucleotides; Performance evaluation; Physiological aspects; Plant Genetics and Genomics; Predictions; Protein Binding; Proteomics; Software; Support vector machines; Testing; TF-DNA binding prediction; Transcription factor; Transcription factors; Transcription Factors - metabolism; China; Deep learning; ChIP-seq; TF-DNA binding prediction; Transcription factor