ClearFinder: a Python GUI for annotating cells in cleared mouse brain - Pastore, Stefan; Hillenbrand, Philipp; Molnar, Nils; Kovlyagina, Irina; Chongtham, Monika Chanu; Sys, Stanislav; Lutz, Beat; Tevosian, Margarita; Gerber, Susanne (BMC bioinformatics, 2025)
Keywords: 3D volumetric imaging; Accessibility; Algorithms; Animals; Annotations; Antibodies; Atlas alignment; Bioinformatics; Biomedical and Life Sciences; Brain - cytology; Brain cells; Brain research; Cell count; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Data analysis; Fluorescence microscopy; Graphical user interface; Imaging, Three-Dimensional - methods; Life Sciences; Light; Light sheets; Measurement; Methods; Mice; Microarrays; Microscopy; Neurons - cytology; Observations; Python (Programming language); Software; Statistical analysis; Tissue clearing; Troubleshooting; User interface; User-Computer Interface; Visualization; Germany; United States--US; Tissue clearing; 3D volumetric imaging; Atlas alignment; Cell count