Recombination between RNA viruses and plasmids might have played a central role in the origin and evolution of small DNA viruses
The finding that viruses with RNA and DNA genomes can recombine to produce chimeric entities provides valuable insights into the origin and evolution of viruses. It also substantiates the hypothesis that certain groups of DNA viruses could have emerged from plasmids via acquisition of capsid protein...
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| Published in | BioEssays Vol. 34; no. 10; pp. 867 - 870 |
|---|---|
| Main Author | |
| Format | Journal Article |
| Language | English |
| Published |
Weinheim
WILEY-VCH Verlag
01.10.2012
WILEY‐VCH Verlag Wiley Subscription Services, Inc Wiley-VCH Verlag |
| Subjects | |
| Online Access | Get full text |
| ISSN | 0265-9247 1521-1878 1521-1878 |
| DOI | 10.1002/bies.201200083 |
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| Abstract | The finding that viruses with RNA and DNA genomes can recombine to produce chimeric entities provides valuable insights into the origin and evolution of viruses. It also substantiates the hypothesis that certain groups of DNA viruses could have emerged from plasmids via acquisition of capsid protein‐coding genes from RNA viruses. |
|---|---|
| AbstractList | The finding that viruses with RNA and DNA genomes can recombine to produce chimeric entities provides valuable insights into the origin and evolution of viruses. It also substantiates the hypothesis that certain groups of DNA viruses could have emerged from plasmids via acquisition of capsid protein‐coding genes from RNA viruses. The finding that viruses with RNA and DNA genomes can recombine to produce chimeric entities provides valuable insights into the origin and evolution of viruses. It also substantiates the hypothesis that certain groups of DNA viruses could have emerged from plasmids via acquisition of capsid protein-coding genes from RNA viruses.The finding that viruses with RNA and DNA genomes can recombine to produce chimeric entities provides valuable insights into the origin and evolution of viruses. It also substantiates the hypothesis that certain groups of DNA viruses could have emerged from plasmids via acquisition of capsid protein-coding genes from RNA viruses. |
| Author | Krupovic, Mart |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22886750$$D View this record in MEDLINE/PubMed https://pasteur.hal.science/pasteur-01977405$$DView record in HAL |
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| Cites_doi | 10.1093/nar/20.13.3279 10.1073/pnas.152342699 10.1073/pnas.1116168109 10.1126/science.1129761 10.1093/emboj/21.1.1 10.1128/MMBR.00011-11 10.1128/JVI.02203-10 10.1146/annurev-phyto-072910-095351 10.1038/nrmicro2033 10.1016/S0923-2508(03)00065-2 10.1099/0022-1317-73-10-2763 10.1186/1745-6150-7-13 10.1016/j.sbi.2011.11.002 10.1128/JVI.01489-10 10.1186/1745-6150-1-29 10.1016/j.resmic.2009.07.008 10.1186/1471-2148-9-112 10.1038/nrg3199 10.1038/nrmicro2030-c1 10.1016/j.virusres.2006.01.010 10.1099/vir.0.012955-0 |
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| References | Routh A, Domitrovic T, Johnson JE. 2012. Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus. Proc Natl Acad Sci USA 109: 1907- 12. Chappell JD, Prota AE, Dermody TS, Stehle T. 2002. Crystal structure of reovirus attachment protein sigma1 reveals evolutionary relationship to adenovirus fiber. EMBO J 21: 1- 11. Bamford DH. 2003. Do viruses form lineages across different domains of life? Res Microbiol 154: 231- 6. Rosario K, Duffy S, Breitbart M. 2009. Diverse circovirus-like genome architectures revealed by environmental metagenomics. J Gen Virol 90: 2418- 24. Holmes EC. 2011. What does virus evolution tell us about virus origins? J Virol 85: 5247- 51. Koonin EV, Senkevich TG, Dolja VV. 2006. The ancient Virus World and evolution of cells. Biol Direct 1: 29. Campos-Olivas R, Louis JM, Clerot D, Gronenborn B, et al. 2002. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc Natl Acad Sci USA 99: 10310- 5. Krupovic M, Bamford DH. 2009. Does the evolution of viral polymerases reflect the origin and evolution of viruses? Nat Rev Microbiol 7: 250. Speir JA, Johnson JE. 2012. Nucleic acid packaging in viruses. Curr Opin Struct Biol 22: 65- 71. Forterre P. 2006. The origin of viruses and their possible roles in major evolutionary transitions. Virus Res 117: 5- 16. Krupovic M, Prangishvili D, Hendrix RW, Bamford DH. 2011. Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 75: 610- 35. Krupovic M, Bamford DH. 2010. Order to the viral universe. J Virol 84: 12476- 9. Steven AC, Spear PG. 2006. Viral glycoproteins and an evolutionary conundrum. Science 313: 177- 8. Forterre P, Prangishvili D. 2009. The origin of viruses. Res Microbiol 160: 466- 72. Koonin EV, Ilyina TV. 1992. Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins. J Gen Virol 73: 2763- 6. Feschotte C, Gilbert C. 2012. Endogenous viruses: insights into viral evolution and impact on host biology. Nat Rev Genet 13: 283- 96. Sztuba-Solinska J, Urbanowicz A, Figlerowicz M, Bujarski JJ. 2011. RNA-RNA recombination in plant virus replication and evolution. Annu Rev Phytopathol 49: 415- 43. Krupovic M, Bamford DH. 2008. Virus evolution: how far does the double beta-barrel viral lineage extend? Nat Rev Microbiol 6: 941- 8. Diemer GS, Stedman KM. 2012. A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses. Biol Direct 7: 13. Ilyina TV, Koonin EV. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 20: 3279- 85. Krupovic M, Ravantti JJ, Bamford DH. 2009. Geminiviruses: a tale of a plasmid becoming a virus. BMC Evol Biol 9: 112. 2009; 160 2009; 90 2002; 21 2002; 99 2011; 75 2011; 85 2009; 9 2009; 7 2008; 6 2006; 1 1992; 20 2012; 7 2012; 13 2011; 49 2006; 313 2006; 117 2012; 22 2003; 154 2010; 84 1992; 73 2012; 109 e_1_2_8_16_2 e_1_2_8_17_2 e_1_2_8_18_2 e_1_2_8_19_2 e_1_2_8_12_2 e_1_2_8_13_2 e_1_2_8_14_2 e_1_2_8_15_2 e_1_2_8_9_2 e_1_2_8_2_2 e_1_2_8_4_2 e_1_2_8_3_2 e_1_2_8_6_2 e_1_2_8_5_2 e_1_2_8_8_2 e_1_2_8_7_2 e_1_2_8_20_2 e_1_2_8_10_2 e_1_2_8_21_2 e_1_2_8_11_2 e_1_2_8_22_2 |
| References_xml | – reference: Krupovic M, Bamford DH. 2009. Does the evolution of viral polymerases reflect the origin and evolution of viruses? Nat Rev Microbiol 7: 250. – reference: Krupovic M, Bamford DH. 2008. Virus evolution: how far does the double beta-barrel viral lineage extend? Nat Rev Microbiol 6: 941- 8. – reference: Bamford DH. 2003. Do viruses form lineages across different domains of life? Res Microbiol 154: 231- 6. – reference: Koonin EV, Ilyina TV. 1992. Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins. J Gen Virol 73: 2763- 6. – reference: Krupovic M, Ravantti JJ, Bamford DH. 2009. Geminiviruses: a tale of a plasmid becoming a virus. BMC Evol Biol 9: 112. – reference: Forterre P. 2006. The origin of viruses and their possible roles in major evolutionary transitions. Virus Res 117: 5- 16. – reference: Routh A, Domitrovic T, Johnson JE. 2012. Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus. Proc Natl Acad Sci USA 109: 1907- 12. – reference: Steven AC, Spear PG. 2006. Viral glycoproteins and an evolutionary conundrum. Science 313: 177- 8. – reference: Forterre P, Prangishvili D. 2009. The origin of viruses. Res Microbiol 160: 466- 72. – reference: Rosario K, Duffy S, Breitbart M. 2009. Diverse circovirus-like genome architectures revealed by environmental metagenomics. J Gen Virol 90: 2418- 24. – reference: Koonin EV, Senkevich TG, Dolja VV. 2006. The ancient Virus World and evolution of cells. Biol Direct 1: 29. – reference: Campos-Olivas R, Louis JM, Clerot D, Gronenborn B, et al. 2002. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc Natl Acad Sci USA 99: 10310- 5. – reference: Feschotte C, Gilbert C. 2012. Endogenous viruses: insights into viral evolution and impact on host biology. Nat Rev Genet 13: 283- 96. – reference: Krupovic M, Bamford DH. 2010. Order to the viral universe. J Virol 84: 12476- 9. – reference: Diemer GS, Stedman KM. 2012. A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses. Biol Direct 7: 13. – reference: Sztuba-Solinska J, Urbanowicz A, Figlerowicz M, Bujarski JJ. 2011. RNA-RNA recombination in plant virus replication and evolution. Annu Rev Phytopathol 49: 415- 43. – reference: Ilyina TV, Koonin EV. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 20: 3279- 85. – reference: Chappell JD, Prota AE, Dermody TS, Stehle T. 2002. Crystal structure of reovirus attachment protein sigma1 reveals evolutionary relationship to adenovirus fiber. EMBO J 21: 1- 11. – reference: Holmes EC. 2011. What does virus evolution tell us about virus origins? J Virol 85: 5247- 51. – reference: Speir JA, Johnson JE. 2012. Nucleic acid packaging in viruses. Curr Opin Struct Biol 22: 65- 71. – reference: Krupovic M, Prangishvili D, Hendrix RW, Bamford DH. 2011. Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 75: 610- 35. – volume: 7 start-page: 13 year: 2012 article-title: A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses publication-title: Biol Direct – volume: 154 start-page: 231 year: 2003 end-page: 6 article-title: Do viruses form lineages across different domains of life publication-title: Res Microbiol – volume: 160 start-page: 466 year: 2009 end-page: 72 article-title: The origin of viruses publication-title: Res Microbiol – volume: 75 start-page: 610 year: 2011 end-page: 35 article-title: Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere publication-title: Microbiol Mol Biol Rev – volume: 9 start-page: 112 year: 2009 article-title: Geminiviruses: a tale of a plasmid becoming a virus publication-title: BMC Evol Biol – volume: 117 start-page: 5 year: 2006 end-page: 16 article-title: The origin of viruses and their possible roles in major evolutionary transitions publication-title: Virus Res – volume: 313 start-page: 177 year: 2006 end-page: 8 article-title: Viral glycoproteins and an evolutionary conundrum publication-title: Science – volume: 73 start-page: 2763 year: 1992 end-page: 6 article-title: Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins publication-title: J Gen Virol – volume: 109 start-page: 1907 year: 2012 end-page: 12 article-title: Host RNAs, including transposons, are encapsidated by a eukaryotic single‐stranded RNA virus publication-title: Proc Natl Acad Sci USA – volume: 85 start-page: 5247 year: 2011 end-page: 51 article-title: What does virus evolution tell us about virus origins publication-title: J Virol – volume: 7 start-page: 250 year: 2009 article-title: Does the evolution of viral polymerases reflect the origin and evolution of viruses publication-title: Nat Rev Microbiol – volume: 1 start-page: 29 year: 2006 article-title: The ancient Virus World and evolution of cells publication-title: Biol Direct – volume: 13 start-page: 283 year: 2012 end-page: 96 article-title: Endogenous viruses: insights into viral evolution and impact on host biology publication-title: Nat Rev Genet – volume: 84 start-page: 12476 year: 2010 end-page: 9 article-title: Order to the viral universe publication-title: J Virol – volume: 20 start-page: 3279 year: 1992 end-page: 85 article-title: Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria publication-title: Nucleic Acids Res – volume: 6 start-page: 941 year: 2008 end-page: 8 article-title: Virus evolution: how far does the double beta‐barrel viral lineage extend publication-title: Nat Rev Microbiol – volume: 22 start-page: 65 year: 2012 end-page: 71 article-title: Nucleic acid packaging in viruses publication-title: Curr Opin Struct Biol – volume: 90 start-page: 2418 year: 2009 end-page: 24 article-title: Diverse circovirus‐like genome architectures revealed by environmental metagenomics publication-title: J Gen Virol – volume: 49 start-page: 415 year: 2011 end-page: 43 article-title: RNA‐RNA recombination in plant virus replication and evolution publication-title: Annu Rev Phytopathol – volume: 21 start-page: 1 year: 2002 end-page: 11 article-title: Crystal structure of reovirus attachment protein sigma1 reveals evolutionary relationship to adenovirus fiber publication-title: EMBO J – volume: 99 start-page: 10310 year: 2002 end-page: 5 article-title: The structure of a replication initiator unites diverse aspects of nucleic acid metabolism publication-title: Proc Natl Acad Sci USA – ident: e_1_2_8_14_2 doi: 10.1093/nar/20.13.3279 – ident: e_1_2_8_13_2 doi: 10.1073/pnas.152342699 – ident: e_1_2_8_15_2 doi: 10.1073/pnas.1116168109 – ident: e_1_2_8_21_2 doi: 10.1126/science.1129761 – ident: e_1_2_8_22_2 doi: 10.1093/emboj/21.1.1 – ident: e_1_2_8_17_2 doi: 10.1128/MMBR.00011-11 – ident: e_1_2_8_4_2 doi: 10.1128/JVI.02203-10 – ident: e_1_2_8_12_2 doi: 10.1146/annurev-phyto-072910-095351 – ident: e_1_2_8_6_2 doi: 10.1038/nrmicro2033 – ident: e_1_2_8_2_2 doi: 10.1016/S0923-2508(03)00065-2 – ident: e_1_2_8_8_2 doi: 10.1099/0022-1317-73-10-2763 – ident: e_1_2_8_10_2 doi: 10.1186/1745-6150-7-13 – ident: e_1_2_8_16_2 doi: 10.1016/j.sbi.2011.11.002 – ident: e_1_2_8_19_2 doi: 10.1128/JVI.01489-10 – ident: e_1_2_8_5_2 doi: 10.1186/1745-6150-1-29 – ident: e_1_2_8_3_2 doi: 10.1016/j.resmic.2009.07.008 – ident: e_1_2_8_9_2 doi: 10.1186/1471-2148-9-112 – ident: e_1_2_8_11_2 doi: 10.1038/nrg3199 – ident: e_1_2_8_20_2 doi: 10.1038/nrmicro2030-c1 – ident: e_1_2_8_7_2 doi: 10.1016/j.virusres.2006.01.010 – ident: e_1_2_8_18_2 doi: 10.1099/vir.0.012955-0 |
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| Title | Recombination between RNA viruses and plasmids might have played a central role in the origin and evolution of small DNA viruses |
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