Anatomical guidance for functional near-infrared spectroscopy: AtlasViewer tutorial
Functional near-infrared spectroscopy (fNIRS) is an optical imaging method that is used to noninvasively measure cerebral hemoglobin concentration changes induced by brain activation. Using structural guidance in fNIRS research enhances interpretation of results and facilitates making comparisons be...
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| Published in | Neurophotonics (Print) Vol. 2; no. 2; p. 020801 |
|---|---|
| Main Authors | , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
Society of Photo-Optical Instrumentation Engineers
01.04.2015
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| Subjects | |
| Online Access | Get full text |
| ISSN | 2329-423X 2329-4248 2329-4248 |
| DOI | 10.1117/1.NPh.2.2.020801 |
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| Abstract | Functional near-infrared spectroscopy (fNIRS) is an optical imaging method that is used to noninvasively measure cerebral hemoglobin concentration changes induced by brain activation. Using structural guidance in fNIRS research enhances interpretation of results and facilitates making comparisons between studies. AtlasViewer is an open-source software package we have developed that incorporates multiple spatial registration tools to enable structural guidance in the interpretation of fNIRS studies. We introduce the reader to the layout of the AtlasViewer graphical user interface, the folder structure, and user files required in the creation of fNIRS probes containing sources and detectors registered to desired locations on the head, evaluating probe fabrication error and intersubject probe placement variability, and different procedures for estimating measurement sensitivity to different brain regions as well as image reconstruction performance. Further, we detail how AtlasViewer provides a generic head atlas for guiding interpretation of fNIRS results, but also permits users to provide subject-specific head anatomies to interpret their results. We anticipate that AtlasViewer will be a valuable tool in improving the anatomical interpretation of fNIRS studies. |
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| AbstractList | Functional near-infrared spectroscopy (fNIRS) is an optical imaging method that is used to noninvasively measure cerebral hemoglobin concentration changes induced by brain activation. Using structural guidance in fNIRS research enhances interpretation of results and facilitates making comparisons between studies. AtlasViewer is an open-source software package we have developed that incorporates multiple spatial registration tools to enable structural guidance in the interpretation of fNIRS studies. We introduce the reader to the layout of the AtlasViewer graphical user interface, the folder structure, and user files required in the creation of fNIRS probes containing sources and detectors registered to desired locations on the head, evaluating probe fabrication error and intersubject probe placement variability, and different procedures for estimating measurement sensitivity to different brain regions as well as image reconstruction performance. Further, we detail how AtlasViewer provides a generic head atlas for guiding interpretation of fNIRS results, but also permits users to provide subject-specific head anatomies to interpret their results. We anticipate that AtlasViewer will be a valuable tool in improving the anatomical interpretation of fNIRS studies.Functional near-infrared spectroscopy (fNIRS) is an optical imaging method that is used to noninvasively measure cerebral hemoglobin concentration changes induced by brain activation. Using structural guidance in fNIRS research enhances interpretation of results and facilitates making comparisons between studies. AtlasViewer is an open-source software package we have developed that incorporates multiple spatial registration tools to enable structural guidance in the interpretation of fNIRS studies. We introduce the reader to the layout of the AtlasViewer graphical user interface, the folder structure, and user files required in the creation of fNIRS probes containing sources and detectors registered to desired locations on the head, evaluating probe fabrication error and intersubject probe placement variability, and different procedures for estimating measurement sensitivity to different brain regions as well as image reconstruction performance. Further, we detail how AtlasViewer provides a generic head atlas for guiding interpretation of fNIRS results, but also permits users to provide subject-specific head anatomies to interpret their results. We anticipate that AtlasViewer will be a valuable tool in improving the anatomical interpretation of fNIRS studies. Functional near-infrared spectroscopy (fNIRS) is an optical imaging method that is used to noninvasively measure cerebral hemoglobin concentration changes induced by brain activation. Using structural guidance in fNIRS research enhances interpretation of results and facilitates making comparisons between studies. AtlasViewer is an open-source software package we have developed that incorporates multiple spatial registration tools to enable structural guidance in the interpretation of fNIRS studies. We introduce the reader to the layout of the AtlasViewer graphical user interface, the folder structure, and user files required in the creation of fNIRS probes containing sources and detectors registered to desired locations on the head, evaluating probe fabrication error and intersubject probe placement variability, and different procedures for estimating measurement sensitivity to different brain regions as well as image reconstruction performance. Further, we detail how AtlasViewer provides a generic head atlas for guiding interpretation of fNIRS results, but also permits users to provide subject-specific head anatomies to interpret their results. We anticipate that AtlasViewer will be a valuable tool in improving the anatomical interpretation of fNIRS studies. |
| Author | Borsook, David Tsuzuki, Daisuke Yücel, Meryem A Cooper, Robert J Boas, David A Aasted, Christopher M Dan, Ippeita Dubb, Jay Becerra, Lino Petkov, Mike P |
| Author_xml | – sequence: 1 givenname: Christopher M surname: Aasted fullname: Aasted, Christopher M organization: bDepartment of Anesthesiology, Perioperative, and Pain Medicine, Boston Children's Hospital, 300 Longwood Avenue, Boston, Massachusetts 02115, United States – sequence: 2 givenname: Meryem A surname: Yücel fullname: Yücel, Meryem A organization: cDepartment of Radiology, Athinoula Martinos Center for Biomedical Imaging, 149 13th Street, Charlestown, Massachusetts 02129, United States – sequence: 3 givenname: Robert J surname: Cooper fullname: Cooper, Robert J organization: dUniversity College London, Department of Medical Physics and Biomedical Engineering, Gower Street, London WC1E 6BT, United Kingdom – sequence: 4 givenname: Jay surname: Dubb fullname: Dubb, Jay organization: cDepartment of Radiology, Athinoula Martinos Center for Biomedical Imaging, 149 13th Street, Charlestown, Massachusetts 02129, United States – sequence: 5 givenname: Daisuke surname: Tsuzuki fullname: Tsuzuki, Daisuke organization: eChuo University, Faculty of Science and Engineering, 1-13-27 Kasuga, Bunkyo, Tokyo 112-8551, Japan – sequence: 6 givenname: Lino surname: Becerra fullname: Becerra, Lino organization: gDepartment of Psychiatry, McLean Hospital, 115 Mill Street, Belmont, Massachusetts 02478, United States – sequence: 7 givenname: Mike P surname: Petkov fullname: Petkov, Mike P organization: bDepartment of Anesthesiology, Perioperative, and Pain Medicine, Boston Children's Hospital, 300 Longwood Avenue, Boston, Massachusetts 02115, United States – sequence: 8 givenname: David surname: Borsook fullname: Borsook, David organization: gDepartment of Psychiatry, McLean Hospital, 115 Mill Street, Belmont, Massachusetts 02478, United States – sequence: 9 givenname: Ippeita surname: Dan fullname: Dan, Ippeita organization: eChuo University, Faculty of Science and Engineering, 1-13-27 Kasuga, Bunkyo, Tokyo 112-8551, Japan – sequence: 10 givenname: David A surname: Boas fullname: Boas, David A email: dboas@nmr.mgh.harvard.edu organization: cDepartment of Radiology, Athinoula Martinos Center for Biomedical Imaging, 149 13th Street, Charlestown, Massachusetts 02129, United States |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26157991$$D View this record in MEDLINE/PubMed |
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