Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha

Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant, the efficiency was too low to apply to functional analysis. In this study, we show the establishment of CRISPR/Cas9 genome editing vectors w...

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Published inPloS one Vol. 13; no. 10; p. e0205117
Main Authors Sugano, Shigeo S., Nishihama, Ryuichi, Shirakawa, Makoto, Takagi, Junpei, Matsuda, Yoriko, Ishida, Sakiko, Shimada, Tomoo, Hara-Nishimura, Ikuko, Osakabe, Keishi, Kohchi, Takayuki
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 31.10.2018
Public Library of Science (PLoS)
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Online AccessGet full text
ISSN1932-6203
1932-6203
DOI10.1371/journal.pone.0205117

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Abstract Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant, the efficiency was too low to apply to functional analysis. In this study, we show the establishment of CRISPR/Cas9 genome editing vectors with high efficiency for both construction and genome editing. Codon optimization of Cas9 to Arabidopsis achieved over 70% genome editing efficiency at two loci tested. Systematic assessment revealed that guide sequences of 17 nt or shorter dramatically decreased this efficiency. We also demonstrated that a combinatorial use of this system and a floxed complementation construct enabled conditional analysis of a nearly essential gene. This study reports that simple, rapid, and efficient genome editing is feasible with the series of developed vectors.
AbstractList Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant, the efficiency was too low to apply to functional analysis. In this study, we show the establishment of CRISPR/Cas9 genome editing vectors with high efficiency for both construction and genome editing. Codon optimization of Cas9 to Arabidopsis achieved over 70% genome editing efficiency at two loci tested. Systematic assessment revealed that guide sequences of 17 nt or shorter dramatically decreased this efficiency. We also demonstrated that a combinatorial use of this system and a floxed complementation construct enabled conditional analysis of a nearly essential gene. This study reports that simple, rapid, and efficient genome editing is feasible with the series of developed vectors.
Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant, the efficiency was too low to apply to functional analysis. In this study, we show the establishment of CRISPR/Cas9 genome editing vectors with high efficiency for both construction and genome editing. Codon optimization of Cas9 to Arabidopsis achieved over 70% genome editing efficiency at two loci tested. Systematic assessment revealed that guide sequences of 17 nt or shorter dramatically decreased this efficiency. We also demonstrated that a combinatorial use of this system and a floxed complementation construct enabled conditional analysis of a nearly essential gene. This study reports that simple, rapid, and efficient genome editing is feasible with the series of developed vectors.Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant, the efficiency was too low to apply to functional analysis. In this study, we show the establishment of CRISPR/Cas9 genome editing vectors with high efficiency for both construction and genome editing. Codon optimization of Cas9 to Arabidopsis achieved over 70% genome editing efficiency at two loci tested. Systematic assessment revealed that guide sequences of 17 nt or shorter dramatically decreased this efficiency. We also demonstrated that a combinatorial use of this system and a floxed complementation construct enabled conditional analysis of a nearly essential gene. This study reports that simple, rapid, and efficient genome editing is feasible with the series of developed vectors.
Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant, the efficiency was too low to apply to functional analysis. In this study, we show the establishment of CRISPR/Cas9 genome editing vectors with high efficiency for both construction and genome editing. Codon optimization of Cas9 to Arabidopsis achieved over 70% genome editing efficiency at two loci tested. Systematic assessment revealed that guide sequences of 17 nt or shorter dramatically decreased this efficiency. We also demonstrated that a combinatorial use of this system and a floxed complementation construct enabled conditional analysis of a nearly essential gene. This study reports that simple, rapid, and efficient genome editing is feasible with the series of developed vectors.
Author Matsuda, Yoriko
Sugano, Shigeo S.
Shirakawa, Makoto
Osakabe, Keishi
Ishida, Sakiko
Shimada, Tomoo
Hara-Nishimura, Ikuko
Nishihama, Ryuichi
Takagi, Junpei
Kohchi, Takayuki
AuthorAffiliation 1 R-GIRO, Ritsumeikan University, Kusatsu, Shiga, Japan
University of Tsukuba, JAPAN
3 Graduate School of Biostudies, Kyoto University, Kyoto, Japan
2 JST, PRESTO, Kawaguchi, Saitama, Japan
4 Graduate School of Science, Kyoto University, Kyoto, Japan
5 Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Tokushima, Japan
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– name: 4 Graduate School of Science, Kyoto University, Kyoto, Japan
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ContentType Journal Article
Copyright 2018 Sugano et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
2018 Sugano et al 2018 Sugano et al
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Competing Interests: This study was partly funded by a donation from Otsuka Pharmaceuticals to Tokushima University. There are no patents, products in development or marketed products to declare. This does not alter our adherence to all the PLOS ONE policies on sharing data and materials, as detailed online in the guide for authors.
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Snippet Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant,...
Marchantia polymorpha is one of the model species of basal land plants. Although CRISPR/Cas9-based genome editing has already been demonstrated for this plant,...
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SubjectTerms Biology and life sciences
Cell cycle
Combinatorial analysis
Complementation
CRISPR
Editing
Efficiency
Engineering and Technology
Feasibility studies
Flowers & plants
Functional analysis
Gene expression
Genetic analysis
Genetics
Genome editing
Genomes
Genomics
Kinases
Marchantia polymorpha
Mutation
Optimization
Proteins
Research and Analysis Methods
RNA polymerase
Sequences
Trends
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Title Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha
URI https://www.ncbi.nlm.nih.gov/pubmed/30379827
https://www.proquest.com/docview/2127655563
https://www.proquest.com/docview/2127952519
https://pubmed.ncbi.nlm.nih.gov/PMC6209168
https://doaj.org/article/9f2622d2a4a6491aa3b9e0a4b4656000
http://dx.doi.org/10.1371/journal.pone.0205117
Volume 13
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