StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees - Roosaare, Märt; Vaher, Mihkel; Kaplinski, Lauris; Möls, Märt; Andreson, Reidar; Lepamets, Maarja; Kõressaar, Triinu; Naaber, Paul; Kõljalg, Siiri; Remm, Maido (PeerJ (San Francisco, CA), 2017)
Keywords: Algorithms; Bacteria; Bioinformatics; Biology; Blacklisting; Branches; Clade; Classification; Computational Biology; Deoxyribonucleic acid; Diagnostics; DNA; DNA sequencing; E coli; Escherichia coli; Fourier transforms; Genomes; Genomics; Identification; Identification and classification; k-mer; Methods; Microbiology; Shigella; Species identification; Strain identification; Taxonomy; k-mer; Clade; Diagnostics; Species identification; Strain identification