Reference-based genome compression using the longest matched substrings with parallelization consideration - Lu, Zhiwen; Guo, Lu; Chen, Jianhua; Wang, Rongshu (BMC bioinformatics, 2023)
Keywords: Algorithms; Arrays; Bioinformatics; Biomedical and Life Sciences; Compression; Compression ratio; Computation; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; CUDA; Data compression; Dictionaries; DNA sequencing; Gene sequencing; Genetic research; Genome compression; Genomes; Genomics; Life Sciences; Methods; Microarrays; Multiprocessing; Next-generation sequencing; Nucleotide sequence; Nucleotide sequencing; Parallel processing; Parallelization; Reference-based; Suffix array; Whole genome sequencing; China; CUDA; Reference-based; Suffix array; Parallelization; Genome compression