Tertiary Lymphoid Tissues Are Microenvironments with Intensive Interactions between Immune Cells and Proinflammatory Parenchymal Cells in Aged Kidneys
Visual Abstract Significance StatementEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms underlying TLT expansion and their effect on renal regeneration remain unclear. The autho...
        Saved in:
      
    
          | Published in | Journal of the American Society of Nephrology Vol. 34; no. 10; pp. 1687 - 1708 | 
|---|---|
| Main Authors | , , , , , , , , , , | 
| Format | Journal Article | 
| Language | English | 
| Published | 
        United States
          American Society of Nephrology
    
        01.10.2023
     | 
| Subjects | |
| Online Access | Get full text | 
| ISSN | 1046-6673 1533-3450 1533-3450  | 
| DOI | 10.1681/ASN.0000000000000202 | 
Cover
| Abstract | Visual Abstract
Significance StatementEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms underlying TLT expansion and their effect on renal regeneration remain unclear. The authors report that single-nucleus RNA sequencing and validation experiments demonstrate that TLTs potentially amplify inflammation in aged injured kidneys. Lymphocytes within TLTs promote proinflammatory phenotypes of the surrounding proximal tubules and fibroblasts within the TLTs via proinflammatory cytokine production. These proinflammatory parenchymal cells then interact with immune cells by chemokine or cytokine production. Such cell-cell interactions potentially increase inflammation, expand TLTs, and exacerbate kidney injury. These findings help illuminate renal TLT pathology and suggest potential therapeutic targets.BackgroundEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms that expand TLTs and underlie exacerbation of kidney injury remain unclear.MethodsWe performed single-nucleus RNA sequencing (snRNA-seq) on aged mouse kidneys with TLTs after ischemia-reperfusion injury. The results were validated using immunostaining, in situ hybridization of murine and human kidneys, and in vitro experiments.ResultsUsing snRNA-seq, we identified proinflammatory and profibrotic Vcam1+ injured proximal tubules (PTs) with NFκB and IFN-inducible transcription factor activation. VCAM1+ PTs were preferentially localized around TLTs and drove inflammation and fibrosis via the production of multiple chemokines or cytokines. Lymphocytes within TLTs expressed Tnf and Ifng at high levels, which synergistically upregulated VCAM1 and chemokine expression in cultured PT cells. In addition, snRNA-seq also identified proinflammatory and profibrotic fibroblasts, which resided within and outside TLTs, respectively. Proinflammatory fibroblasts exhibited STAT1 activation and various chemokine or cytokine production, including CXCL9/CXCL10 and B cell-activating factor, contributing to lymphocyte recruitment and survival. IFNγ upregulated the expression of these molecules in cultured fibroblasts in a STAT1-dependent manner, indicating potential bidirectional interactions between IFNγ-producing CXCR3+ T cells and proinflammatory fibroblasts within TLTs. The cellular and molecular components described in this study were confirmed in human kidneys with TLTs.ConclusionsThese findings suggest that TLTs potentially amplify inflammation by providing a microenvironment that allows intense interactions between renal parenchymal and immune cells. These interactions may serve as novel therapeutic targets in kidney diseases involving TLT formation. | 
    
|---|---|
| AbstractList | Ectopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms underlying TLT expansion and their effect on renal regeneration remain unclear. The authors report that single-nucleus RNA sequencing and validation experiments demonstrate that TLTs potentially amplify inflammation in aged injured kidneys. Lymphocytes within TLTs promote proinflammatory phenotypes of the surrounding proximal tubules and fibroblasts within the TLTs via proinflammatory cytokine production. These proinflammatory parenchymal cells then interact with immune cells by chemokine or cytokine production. Such cell-cell interactions potentially increase inflammation, expand TLTs, and exacerbate kidney injury. These findings help illuminate renal TLT pathology and suggest potential therapeutic targets.SIGNIFICANCE STATEMENTEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms underlying TLT expansion and their effect on renal regeneration remain unclear. The authors report that single-nucleus RNA sequencing and validation experiments demonstrate that TLTs potentially amplify inflammation in aged injured kidneys. Lymphocytes within TLTs promote proinflammatory phenotypes of the surrounding proximal tubules and fibroblasts within the TLTs via proinflammatory cytokine production. These proinflammatory parenchymal cells then interact with immune cells by chemokine or cytokine production. Such cell-cell interactions potentially increase inflammation, expand TLTs, and exacerbate kidney injury. These findings help illuminate renal TLT pathology and suggest potential therapeutic targets.Ectopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms that expand TLTs and underlie exacerbation of kidney injury remain unclear.BACKGROUNDEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms that expand TLTs and underlie exacerbation of kidney injury remain unclear.We performed single-nucleus RNA sequencing (snRNA-seq) on aged mouse kidneys with TLTs after ischemia-reperfusion injury. The results were validated using immunostaining, in situ hybridization of murine and human kidneys, and in vitro experiments.METHODSWe performed single-nucleus RNA sequencing (snRNA-seq) on aged mouse kidneys with TLTs after ischemia-reperfusion injury. The results were validated using immunostaining, in situ hybridization of murine and human kidneys, and in vitro experiments.Using snRNA-seq, we identified proinflammatory and profibrotic Vcam1+ injured proximal tubules (PTs) with NF κ B and IFN-inducible transcription factor activation. VCAM1 + PTs were preferentially localized around TLTs and drove inflammation and fibrosis via the production of multiple chemokines or cytokines. Lymphocytes within TLTs expressed Tnf and Ifng at high levels, which synergistically upregulated VCAM1 and chemokine expression in cultured PT cells. In addition, snRNA-seq also identified proinflammatory and profibrotic fibroblasts, which resided within and outside TLTs, respectively. Proinflammatory fibroblasts exhibited STAT1 activation and various chemokine or cytokine production, including CXCL9/CXCL10 and B cell-activating factor, contributing to lymphocyte recruitment and survival. IFN γ upregulated the expression of these molecules in cultured fibroblasts in a STAT1-dependent manner, indicating potential bidirectional interactions between IFN γ -producing CXCR3 + T cells and proinflammatory fibroblasts within TLTs. The cellular and molecular components described in this study were confirmed in human kidneys with TLTs.RESULTSUsing snRNA-seq, we identified proinflammatory and profibrotic Vcam1+ injured proximal tubules (PTs) with NF κ B and IFN-inducible transcription factor activation. VCAM1 + PTs were preferentially localized around TLTs and drove inflammation and fibrosis via the production of multiple chemokines or cytokines. Lymphocytes within TLTs expressed Tnf and Ifng at high levels, which synergistically upregulated VCAM1 and chemokine expression in cultured PT cells. In addition, snRNA-seq also identified proinflammatory and profibrotic fibroblasts, which resided within and outside TLTs, respectively. Proinflammatory fibroblasts exhibited STAT1 activation and various chemokine or cytokine production, including CXCL9/CXCL10 and B cell-activating factor, contributing to lymphocyte recruitment and survival. IFN γ upregulated the expression of these molecules in cultured fibroblasts in a STAT1-dependent manner, indicating potential bidirectional interactions between IFN γ -producing CXCR3 + T cells and proinflammatory fibroblasts within TLTs. The cellular and molecular components described in this study were confirmed in human kidneys with TLTs.These findings suggest that TLTs potentially amplify inflammation by providing a microenvironment that allows intense interactions between renal parenchymal and immune cells. These interactions may serve as novel therapeutic targets in kidney diseases involving TLT formation.CONCLUSIONSThese findings suggest that TLTs potentially amplify inflammation by providing a microenvironment that allows intense interactions between renal parenchymal and immune cells. These interactions may serve as novel therapeutic targets in kidney diseases involving TLT formation. Visual Abstract Significance StatementEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms underlying TLT expansion and their effect on renal regeneration remain unclear. The authors report that single-nucleus RNA sequencing and validation experiments demonstrate that TLTs potentially amplify inflammation in aged injured kidneys. Lymphocytes within TLTs promote proinflammatory phenotypes of the surrounding proximal tubules and fibroblasts within the TLTs via proinflammatory cytokine production. These proinflammatory parenchymal cells then interact with immune cells by chemokine or cytokine production. Such cell-cell interactions potentially increase inflammation, expand TLTs, and exacerbate kidney injury. These findings help illuminate renal TLT pathology and suggest potential therapeutic targets.BackgroundEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms that expand TLTs and underlie exacerbation of kidney injury remain unclear.MethodsWe performed single-nucleus RNA sequencing (snRNA-seq) on aged mouse kidneys with TLTs after ischemia-reperfusion injury. The results were validated using immunostaining, in situ hybridization of murine and human kidneys, and in vitro experiments.ResultsUsing snRNA-seq, we identified proinflammatory and profibrotic Vcam1+ injured proximal tubules (PTs) with NFκB and IFN-inducible transcription factor activation. VCAM1+ PTs were preferentially localized around TLTs and drove inflammation and fibrosis via the production of multiple chemokines or cytokines. Lymphocytes within TLTs expressed Tnf and Ifng at high levels, which synergistically upregulated VCAM1 and chemokine expression in cultured PT cells. In addition, snRNA-seq also identified proinflammatory and profibrotic fibroblasts, which resided within and outside TLTs, respectively. Proinflammatory fibroblasts exhibited STAT1 activation and various chemokine or cytokine production, including CXCL9/CXCL10 and B cell-activating factor, contributing to lymphocyte recruitment and survival. IFNγ upregulated the expression of these molecules in cultured fibroblasts in a STAT1-dependent manner, indicating potential bidirectional interactions between IFNγ-producing CXCR3+ T cells and proinflammatory fibroblasts within TLTs. The cellular and molecular components described in this study were confirmed in human kidneys with TLTs.ConclusionsThese findings suggest that TLTs potentially amplify inflammation by providing a microenvironment that allows intense interactions between renal parenchymal and immune cells. These interactions may serve as novel therapeutic targets in kidney diseases involving TLT formation. Ectopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms underlying TLT expansion and their effect on renal regeneration remain unclear. The authors report that single-nucleus RNA sequencing and validation experiments demonstrate that TLTs potentially amplify inflammation in aged injured kidneys. Lymphocytes within TLTs promote proinflammatory phenotypes of the surrounding proximal tubules and fibroblasts within the TLTs via proinflammatory cytokine production. These proinflammatory parenchymal cells then interact with immune cells by chemokine or cytokine production. Such cell-cell interactions potentially increase inflammation, expand TLTs, and exacerbate kidney injury. These findings help illuminate renal TLT pathology and suggest potential therapeutic targets. Ectopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However, the mechanisms that expand TLTs and underlie exacerbation of kidney injury remain unclear. We performed single-nucleus RNA sequencing (snRNA-seq) on aged mouse kidneys with TLTs after ischemia-reperfusion injury. The results were validated using immunostaining, in situ hybridization of murine and human kidneys, and in vitro experiments. Using snRNA-seq, we identified proinflammatory and profibrotic Vcam1+ injured proximal tubules (PTs) with NF κ B and IFN-inducible transcription factor activation. VCAM1 + PTs were preferentially localized around TLTs and drove inflammation and fibrosis via the production of multiple chemokines or cytokines. Lymphocytes within TLTs expressed Tnf and Ifng at high levels, which synergistically upregulated VCAM1 and chemokine expression in cultured PT cells. In addition, snRNA-seq also identified proinflammatory and profibrotic fibroblasts, which resided within and outside TLTs, respectively. Proinflammatory fibroblasts exhibited STAT1 activation and various chemokine or cytokine production, including CXCL9/CXCL10 and B cell-activating factor, contributing to lymphocyte recruitment and survival. IFN γ upregulated the expression of these molecules in cultured fibroblasts in a STAT1-dependent manner, indicating potential bidirectional interactions between IFN γ -producing CXCR3 + T cells and proinflammatory fibroblasts within TLTs. The cellular and molecular components described in this study were confirmed in human kidneys with TLTs. These findings suggest that TLTs potentially amplify inflammation by providing a microenvironment that allows intense interactions between renal parenchymal and immune cells. These interactions may serve as novel therapeutic targets in kidney diseases involving TLT formation.  | 
    
| Author | Murakawa, Yasuhiro Toriu, Naoya Yamamoto, Takuya Yanagita, Motoko Oguchi, Akiko Ogawa, Osamu Sato, Yuki Sakurai, Satoko Kobayashi, Takashi Haga, Hironori Yoshikawa, Takahisa  | 
    
| Author_xml | – sequence: 1 givenname: Takahisa orcidid: 0000-0003-3426-5982 surname: Yoshikawa fullname: Yoshikawa, Takahisa organization: Department of Nephrology, Graduate School of Medicine, Kyoto University, Kyoto, Japan – sequence: 2 givenname: Akiko surname: Oguchi fullname: Oguchi, Akiko organization: Institute for the Advanced Study of Human Biology (WPI-ASHBi), Kyoto University, Kyoto, Japan – sequence: 3 givenname: Naoya surname: Toriu fullname: Toriu, Naoya organization: Institute for the Advanced Study of Human Biology (WPI-ASHBi), Kyoto University, Kyoto, Japan – sequence: 4 givenname: Yuki orcidid: 0000-0002-8417-6083 surname: Sato fullname: Sato, Yuki organization: Department of Nephrology, Graduate School of Medicine, Kyoto University, Kyoto, Japan – sequence: 5 givenname: Takashi orcidid: 0000-0003-1069-2816 surname: Kobayashi fullname: Kobayashi, Takashi organization: Department of Urology, Graduate School of Medicine, Kyoto University, Kyoto, Japan – sequence: 6 givenname: Osamu surname: Ogawa fullname: Ogawa, Osamu organization: Department of Urology, Graduate School of Medicine, Kyoto University, Kyoto, Japan – sequence: 7 givenname: Hironori orcidid: 0000-0003-4322-9561 surname: Haga fullname: Haga, Hironori organization: Department of Diagnostic Pathology, Graduate School of Medicine, Kyoto University, Kyoto, Japan – sequence: 8 givenname: Satoko orcidid: 0009-0008-6781-2122 surname: Sakurai fullname: Sakurai, Satoko organization: Department of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan – sequence: 9 givenname: Takuya orcidid: 0000-0002-0022-3947 surname: Yamamoto fullname: Yamamoto, Takuya organization: Medical-risk Avoidance based on iPS Cells Team, RIKEN Center for Advanced Intelligence Project (AIP), Kyoto, Japan – sequence: 10 givenname: Yasuhiro orcidid: 0000-0002-5415-1352 surname: Murakawa fullname: Murakawa, Yasuhiro organization: IFOM-ETS, Milan, Italy – sequence: 11 givenname: Motoko orcidid: 0000-0002-0339-9008 surname: Yanagita fullname: Yanagita, Motoko organization: Institute for the Advanced Study of Human Biology (WPI-ASHBi), Kyoto University, Kyoto, Japan  | 
    
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/37548710$$D View this record in MEDLINE/PubMed | 
    
| BookMark | eNqFUtuO0zAQjdAi9gJ_gJAfeckSJ06c8oKqiktFgZUoz9HUnmwMjt21nUb5Eb4XlxZYFgR-8Uiec47nnDlPTow1mCSPaXZJq5o-m398f5ndPnmW30vOaFkUacHK7CTWGavSquLFaXLu_ecso2XO-YPktOAlqznNzpKva3RBgZvIauq3nVWSrJX3A3oyd0jeKeEsmp1y1vRogiejCh1ZmoDGqx1-rxyIoKzxZINhRDRk2feDQbJArT0BI8mVs8q0Gvoego1aV-DQiG7qQR-7lCHza5TkrZIGJ_8wud-C9vjoeF8kn169XC_epKsPr5eL-SoVZVXn6YxKyIuqkjxnAthMypzPBJMtYtWWSBE2wHklcVa3dR4npjUDUXAqsGRyUxQXSXngHcwWphG0brZO9dGPhmbN3ucGvGnu-hxxLw647bDpUYpojYNfWAuq-f3FqK65trvIWla0prPI8PTI4OxNtDs0vfIiegEG7eCbvGa8YJSVe7Ent8V-qvxIMTawQ0MMy3uH7R9DxGX52xDP78CECrCPMn5Z6f-B6wN4tDqugP-ihxFd0yHo0P0b-g0cUtaa | 
    
| CitedBy_id | crossref_primary_10_1681_ASN_0000000000000216 crossref_primary_10_1016_j_kint_2024_02_007 crossref_primary_10_1016_j_transproceed_2024_01_012 crossref_primary_10_1038_s43856_024_00708_3 crossref_primary_10_1016_j_ajpath_2024_07_008 crossref_primary_10_1152_ajprenal_00120_2024 crossref_primary_10_1016_j_xfss_2024_10_001 crossref_primary_10_1038_s41581_023_00802_0 crossref_primary_10_1172_JCI188358 crossref_primary_10_1038_s41581_024_00868_4 crossref_primary_10_1371_journal_pone_0311193 crossref_primary_10_1038_s41581_024_00860_y crossref_primary_10_1038_s41577_025_01131_y  | 
    
| Cites_doi | 10.1126/sciadv.aaw8330 10.1038/79738 10.1681/ASN.2021050715 10.1016/j.kint.2015.12.037 10.1016/j.cell.2020.11.025 10.1038/nrrheum.2013.4 10.1172/JCI146071 10.1126/scitranslmed.abe0407 10.1681/ASN.2019010068 10.1016/j.cell.2019.05.031 10.1093/bioinformatics/bts635 10.1155/2012/967584 10.1681/ASN.2016050508 10.1371/journal.pone.0079839 10.3389/fimmu.2021.790125 10.1073/pnas.2005477117 10.1038/s41598-020-73147-4 10.1172/jci.insight.121886 10.1016/j.coi.2017.03.006 10.1038/s41568-019-0144-6 10.1093/nar/gky354 10.1038/s41467-021-26530-2 10.1038/nrrheum.2016.217 10.1038/nmeth.4463 10.1186/1471-2105-14-128 10.1073/pnas.2026684118 10.1038/srep03355 10.1002/sctm.20-0392 10.1126/science.aar2131 10.1038/s41596-020-0292-x 10.1016/j.kint.2020.02.023 10.1038/nrneph.2014.170 10.1084/jem.187.4.655 10.1056/NEJMoa035588 10.1038/s41586-020-2941-1 10.1681/ASN.2018090912 10.1126/science.1061965 10.1038/nrrheum.2017.51 10.1038/75556 10.1093/ndt/gfab212 10.1093/nar/gkaa1113 10.1016/j.cels.2019.03.003 10.1093/gigascience/giaa151 10.1038/s41467-019-09728-3 10.1093/nar/gkw377 10.1016/j.devcel.2019.10.005 10.1073/pnas.1905301116 10.1186/1471-2105-12-323 10.1093/nar/gkaa970 10.1038/s41586-021-04221-8 10.1038/ncomms8866 10.1186/s13059-014-0550-8 10.1681/ASN.2005040364 10.1172/jci.insight.87680 10.2215/CJN.01150113 10.1093/nar/28.1.27 10.1186/1756-0500-7-345 10.3389/fimmu.2020.00976 10.1681/ASN.2019080832 10.4049/jimmunol.168.7.3195 10.1002/cpz1.90 10.1681/ASN.2019020112 10.1111/ajt.16880 10.1681/ASN.2019040415 10.1038/s41467-021-22368-w 10.1038/s41467-022-29701-x 10.3389/fimmu.2019.02938 10.1681/ASN.2018090931 10.4049/jimmunol.169.5.2685 10.1038/s41598-017-08703-6 10.1038/s41581-023-00706-z 10.1038/nmeth.4150 10.1084/jem.189.11.1747 10.1159/000188943  | 
    
| ContentType | Journal Article | 
    
| Copyright | Copyright © 2023 The Author. Published by Wolters Kluwer Health, Inc. on behalf of the American Society of Nephrology. Copyright © 2023 The Author. Published by Wolters Kluwer Health, Inc. on behalf of the American Society of Nephrology. 2023  | 
    
| Copyright_xml | – notice: Copyright © 2023 The Author. Published by Wolters Kluwer Health, Inc. on behalf of the American Society of Nephrology. – notice: Copyright © 2023 The Author. Published by Wolters Kluwer Health, Inc. on behalf of the American Society of Nephrology. 2023  | 
    
| DBID | AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 5PM ADTOC UNPAY  | 
    
| DOI | 10.1681/ASN.0000000000000202 | 
    
| DatabaseName | CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic PubMed Central (Full Participant titles) Unpaywall for CDI: Periodical Content Unpaywall  | 
    
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic  | 
    
| DatabaseTitleList | MEDLINE - Academic MEDLINE  | 
    
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database – sequence: 3 dbid: UNPAY name: Unpaywall url: https://proxy.k.utb.cz/login?url=https://unpaywall.org/ sourceTypes: Open Access Repository  | 
    
| DeliveryMethod | fulltext_linktorsrc | 
    
| Discipline | Medicine | 
    
| EISSN | 1533-3450 | 
    
| EndPage | 1708 | 
    
| ExternalDocumentID | 10.1681/asn.0000000000000202 PMC10561819 37548710 10_1681_ASN_0000000000000202 JASN-2023-000372  | 
    
| Genre | research-article Research Support, Non-U.S. Gov't Journal Article  | 
    
| GrantInformation_xml | – fundername: Japan Society for the Promotion of Science grantid: KAKENHI Grant-in-Aids for Scientific Research B (20H03697) funderid: https://doi.org/10.13039/501100001691 – fundername: Japan Agency for Medical Research and Development grantid: AMED-CREST 22ek0310020, 22gm1210009, 22zf0127003, 21gm5010002, and 21lm0203006 funderid: https://doi.org/10.13039/100009619 – fundername: Japan Society for the Promotion of Science grantid: KAKENHI Grant-in-Aids for Scientific Research B (20H03697) – fundername: Japan Agency for Medical Research and Development grantid: AMED-CREST 22ek0310020, 22gm1210009, 22zf0127003, 21gm5010002, and 21lm0203006  | 
    
| GroupedDBID | --- .55 .GJ 0R~ 18M 29L 2WC 34G 39C 53G 5GY 5RE 5VS 6PF AAQQT AAUIN AAWTL ABBLC ABJNI ABOCM ABXYN ACGFO ACLDA ACZKN ADBBV ADSXY AENEX AFEXH AFFNX AFNMH AHOMT AHQVU ALMA_UNASSIGNED_HOLDINGS BAWUL BTFSW BYPQX CS3 DIK DU5 E3Z EBS EJD ERAAH F5P GX1 H13 HYE HZ~ K-O KQ8 O9- OK1 OVD P0W P2P RHI RIG RPM TEORI TNP TR2 W8F X7M XVB YFH ZGI AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 5PM ADTOC UNPAY  | 
    
| ID | FETCH-LOGICAL-c5682-91da2366d724ca49dd279c4dfee6f5e1eaba776de98f82871184ac371ce54db33 | 
    
| IEDL.DBID | UNPAY | 
    
| ISSN | 1046-6673 1533-3450  | 
    
| IngestDate | Sun Oct 26 04:15:02 EDT 2025 Thu Aug 21 18:31:03 EDT 2025 Fri Sep 05 07:18:47 EDT 2025 Mon Jul 21 05:48:07 EDT 2025 Thu Apr 24 23:04:39 EDT 2025 Wed Oct 01 05:33:40 EDT 2025 Sat Aug 23 20:30:36 EDT 2025  | 
    
| IsDoiOpenAccess | true | 
    
| IsOpenAccess | true | 
    
| IsPeerReviewed | true | 
    
| IsScholarly | true | 
    
| Issue | 10 | 
    
| Keywords | fibroblast lymphocytes transcription factors immunology and pathology fibrosis ischemia-reperfusion proximal tubule chronic inflammation intrinsic renal cell  | 
    
| Language | English | 
    
| License | http://creativecommons.org/licenses/by-nc-nd/4.0 Copyright © 2023 The Author. Published by Wolters Kluwer Health, Inc. on behalf of the American Society of Nephrology. This is an open access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. cc-by-nc-nd  | 
    
| LinkModel | DirectLink | 
    
| MergedId | FETCHMERGED-LOGICAL-c5682-91da2366d724ca49dd279c4dfee6f5e1eaba776de98f82871184ac371ce54db33 | 
    
| Notes | Correspondence: Prof. Motoko Yanagita, Department of Nephrology, Graduate School of Medicine, Kyoto University, Shogoin-Kawahara-cho 54, Sakyo-ku, Kyoto 606-8507, Japan. Email: motoy@kuhp.kyoto-u.ac.jpSee related editorial, "Close Encounters of the Tertiary Kind: Intercellular Inflammatory Communication Long after AKI," on pages 1603-1604. ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23  | 
    
| ORCID | 0000-0002-8417-6083 0009-0008-6781-2122 0000-0002-0022-3947 0000-0003-3426-5982 0000-0002-0339-9008 0000-0002-5415-1352 0000-0003-4322-9561 0000-0003-1069-2816  | 
    
| OpenAccessLink | https://proxy.k.utb.cz/login?url=https://doi.org/10.1681/asn.0000000000000202 | 
    
| PMID | 37548710 | 
    
| PQID | 2847341452 | 
    
| PQPubID | 23479 | 
    
| PageCount | 22 | 
    
| ParticipantIDs | unpaywall_primary_10_1681_asn_0000000000000202 pubmedcentral_primary_oai_pubmedcentral_nih_gov_10561819 proquest_miscellaneous_2847341452 pubmed_primary_37548710 crossref_primary_10_1681_ASN_0000000000000202 crossref_citationtrail_10_1681_ASN_0000000000000202 wolterskluwer_health_10_1681_ASN_0000000000000202  | 
    
| ProviderPackageCode | CITATION AAYXX  | 
    
| PublicationCentury | 2000 | 
    
| PublicationDate | 2023-October | 
    
| PublicationDateYYYYMMDD | 2023-10-01 | 
    
| PublicationDate_xml | – month: 10 year: 2023 text: 2023-October  | 
    
| PublicationDecade | 2020 | 
    
| PublicationPlace | United States | 
    
| PublicationPlace_xml | – name: United States | 
    
| PublicationTitle | Journal of the American Society of Nephrology | 
    
| PublicationTitleAbbrev | JASN | 
    
| PublicationTitleAlternate | J Am Soc Nephrol | 
    
| PublicationYear | 2023 | 
    
| Publisher | American Society of Nephrology | 
    
| Publisher_xml | – name: American Society of Nephrology | 
    
| References | Aibar, González-Blas, Moerman, Huynh-Thu, Imrichova, Hulselmans (B29) 2017; 14 Tomoishi, Fukushima, Shinohara, Katada, Saito (B59) 2017; 7 van Schouwenburg, Rispens, Wolbink (B69) 2013; 9 He, Xie, Wang, Chen, Zhao, Davis (B55) 2013; 8 Luo, Zhu, Yu, Fan, Hu, Mohanta (B1) 2019; 10 Salomon, Netzer, Wildbaum, Schif-Zuck, Maor, Karin (B51) 2002; 169 Karki, Sharma, Tuladhar, Williams, Zalduondo, Samir (B66) 2021; 184 Kirita, Wu, Uchimura, Wilson, Humphreys (B14) 2020; 117 Sato, Oguchi, Fukushima, Masuda, Toriu, Taniguchi (B10) 2022; 132 Tang, Ulich, Lacey, Hill, Qi, Kaufman (B44) 1996; 148 Xu, Chen, Hu, Jiang, Huang, Du (B67) 2022; 601 Sato, Silina, van den Broek, Hirahara, Yanagita (B75) 2023; 19 Suan, Sundling, Brink (B24) 2017; 45 Ashburner, Ball, Blake, Botstein, Butler, Cherry (B36) 2000; 25 Nayar, Campos, Smith, Iannizzotto, Gardner, Mourcin (B72) 2019; 116 O'Sullivan, Mylonas, Hughes, Ferenbach (B48) 2019; 30 Kanehisa, Goto (B34) 2000; 28 Sarwal, Chua, Kambham, Hsieh, Satterwhite, Masek (B5) 2003; 349 Gerhardt, Liu, Koppitch, Cippà, McMahon (B15) 2021; 118 Mcginnis, Murrow, Gartner (B18) 2019; 8 Matloubian, David, Engel, Ryan, Cyster (B47) 2000; 1 Chen, Tan, Kou, Duan, Wang, Meirelles (B31) 2013; 14 Karin (B50) 2020; 11 Zimmerman, Bentley, Lever, Li, Crossman, Song (B22) 2019; 30 Guay, Wojchowski, Fang, Oxburgh (B53) 2014; 7 Shaw, O'Sullivan, Pisco, Borthwick, Gallagher, Péault (B56) 2021; 10 Dobin, Davis, Schlesinger, Drenkow, Zaleski, Jha (B38) 2013; 29 Li, Kuppe, Ziegler, Cheng, Kabgani, Menzel (B58) 2021; 12 Rosales, Yang, Farkash, Ashry, Ge, Aljabban (B74) 2022; 22 Ramilowski, Goldberg, Harshbarger, Kloppmann, Lizio, Satagopam (B27) 2015; 6 Mashiko, Fujihara, Satouh, Miyata, Isotani, Ikawa (B41) 2013; 3 Xie, Bailey, Kuleshov, Clarke, Evangelista, Jenkins (B33) 2021; 1 Panzer, Steinmetz, Reinking, Meyer, Fehr, Schneider (B49) 2006; 17 Stuart, Butler, Hoffman, Hafemeister, Papalexi, Mauck (B17) 2019; 177 Schneider, Mackay, Steiner, Hofmann, Bodmer, Holler (B62) 1999; 189 Park, Shrestha, Qiu, Kondo, Huang, Werth (B11) 2018; 360 Fleig, Kapanadze, Bernier-Latmani, Lill, Wyss, Gamrekelashvili (B73) 2022; 13 Pei, Zeng, Han, Liao, Zhou, Li (B7) 2014; 9 Dumas, Meta, Borri, Goveia, Rohlenova, Conchinha (B13) 2020; 31 Young, Behjati (B19) 2020; 9 Ransick, Lindström, Liu, Zhu, Guo, Alvarado (B25) 2019; 51 Xu, Sharkey, Cantley (B46) 2019; 30 Sato, Tamura, Yanagita (B4) 2021; 38 Qiu, Hill, Packer, Lin, Ma, Trapnell (B30) 2017; 14 Dufour, Dziejman, Liu, Leung, Lane, Luster (B52) 2002; 168 Zerrouk, Miagoux, Dispot, Elati, Niarakis (B68) 2020; 10 Kuppe, Ibrahim, Kranz, Zhang, Ziegler, Perales-Patón (B12) 2021; 589 Concordet, Haeussler (B42) 2018; 46 Sato, Mii, Hamazaki, Fujita, Nakata, Masuda (B9) 2016; 1 Truong, Foster, Barrios, D'agati, Verani, Gonzalez (B54) 1996; 72 Muto, Wilson, Ledru, Wu, Dimke, Waikar (B63) 2021; 12 Thompson, Bixler, Qian, Vora, Scott, Cachero (B61) 2001; 293 Eriguchi, Nakamura, Yokoi, Sugimoto, Takahashi, Hashimoto (B65) 2018; 3 Efremova, Vento-Tormo, Teichmann, Vento-Tormo (B28) 2020; 15 Li, Dewey (B39) 2011; 12 Legler, Loetscher, Roos, Clark-Lewis, Baggiolini, Moser (B60) 1998; 187 Sato, Boor, Fukuma (B16) 2020; 98 Casemayou, Fournel, Bagattin, Schanstra, Belliere, Decramer (B64) 2017; 28 Shen, Sun, Wu, Chen, Dai, Yan (B8) 2012; 2012 Carbon, Douglass, Good (B37) 2021; 49 Bombardieri, Lewis, Pitzalis (B2) 2017; 13 Buhl, Djudjaj, Babickova, Klinkhammer, Folestad, Borkham-Kamphorst (B45) 2016; 89 Kuleshov, Jones, Rouillard, Fernandez, Duan, Wang (B32) 2016; 44 Qi, Liu, Gao (B71) 2021; 12 Lee, Sato, Saito, Fukuma, Saito, Yamamoto (B6) 2022; 33 Sautès-Fridman, Petitprez, Calderaro, Fridman (B3) 2019; 19 Elyahu, Hekselman, Eizenberg-Magar, Berner, Strominger, Schiller (B23) 2019; 5 Wu, Kirita, Donnelly, Humphreys (B26) 2019; 30 Sun, Huang, Liang, Yin, Lin, Wu (B43) 2021; 13 Chen, Clark, Nelson, Kaissling, Ellison, Knepper (B20) 2019; 30 Cheng, Onder, Novkovic, Soneson, Lütge, Pikor (B57) 2019; 10 Rogers, Ferenbach, Isenberg, Thomson, Hughes (B21) 2014; 10 Winthrop (B70) 2017; 13 Kanehisa, Furumichi, Sato, Ishiguro-Watanabe, Tanabe (B35) 2021; 49 Love, Huber, Anders (B40) 2014; 15 Thompson (B61-20250823) 2001; 293 Stuart (B17-20250823) 2019; 177 Young (B19-20250823) 2020; 9 Ashburner (B36-20250823) 2000; 25 Carbon (B37-20250823) 2021; 49 Casemayou (B64-20250823) 2017; 28 Elyahu (B23-20250823) 2019; 5 Ramilowski (B27-20250823) 2015; 6 Xu (B46-20250823) 2019; 30 Truong (B54-20250823) 1996; 72 Pei (B7-20250823) 2014; 9 Tang (B44-20250823) 1996; 148 Li (B58-20250823) 2021; 12 Salomon (B51-20250823) 2002; 169 Guay (B53-20250823) 2014; 7 Schneider (B62-20250823) 1999; 189 Zerrouk (B68-20250823) 2020; 10 Dufour (B52-20250823) 2002; 168 Li (B39-20250823) 2011; 12 Shaw (B56-20250823) 2021; 10 Chen (B31-20250823) 2013; 14 Karin (B50-20250823) 2020; 11 Mcginnis (B18-20250823) 2019; 8 Sun (B43-20250823) 2021; 13 Tomoishi (B59-20250823) 2017; 7 Qiu (B30-20250823) 2017; 14 Sautès-Fridman (B3-20250823) 2019; 19 Kanehisa (B34-20250823) 2000; 28 Buhl (B45-20250823) 2016; 89 Kanehisa (B35-20250823) 2021; 49 Aibar (B29-20250823) 2017; 14 Wu (B26-20250823) 2019; 30 Dobin (B38-20250823) 2013; 29 Cheng (B57-20250823) 2019; 10 He (B55-20250823) 2013; 8 Kirita (B14-20250823) 2020; 117 Qi (B71-20250823) 2021; 12 Panzer (B49-20250823) 2006; 17 Rogers (B21-20250823) 2014; 10 Winthrop (B70-20250823) 2017; 13 Lee (B6-20250823) 2022; 33 Nayar (B72-20250823) 2019; 116 Bombardieri (B2-20250823) 2017; 13 Chen (B20-20250823) 2019; 30 Matloubian (B47-20250823) 2000; 1 Rosales (B74-20250823) 2022; 22 Shen (B8-20250823) 2012; 2012 Efremova (B28-20250823) 2020; 15 O’Sullivan (B48-20250823) 2019; 30 Mashiko (B41-20250823) 2013; 3 Muto (B63-20250823) 2021; 12 Fleig (B73-20250823) 2022; 13 Sato (B75-20250823) 2023; 19 Sato (B9-20250823) 2016; 1 Sato (B10-20250823) 2022; 132 Xie (B33-20250823) 2021; 1 Luo (B1-20250823) 2019; 10 Sato (B4-20250823) 2021; 38 Karki (B66-20250823) 2021; 184 Dumas (B13-20250823) 2020; 31 Sato (B16-20250823) 2020; 98 Kuppe (B12-20250823) 2021; 589 Kuleshov (B32-20250823) 2016; 44 Xu (B67-20250823) 2022; 601 Sarwal (B5-20250823) 2003; 349 Suan (B24-20250823) 2017; 45 Gerhardt (B15-20250823) 2021; 118 Park (B11-20250823) 2018; 360 Love (B40-20250823) 2014; 15 Legler (B60-20250823) 1998; 187 van Schouwenburg (B69-20250823) 2013; 9 Concordet (B42-20250823) 2018; 46 Zimmerman (B22-20250823) 2019; 30 Eriguchi (B65-20250823) 2018; 3 Ransick (B25-20250823) 2019; 51 37782545 - J Am Soc Nephrol. 2023 Oct 1;34(10):1603-1604. doi: 10.1681/ASN.0000000000000216  | 
    
| References_xml | – volume: 98 start-page: 448 year: 2020 end-page: 463 ident: B16 article-title: Developmental stages of tertiary lymphoid tissue reflect local injury and inflammation in mouse and human kidneys publication-title: Kidney Int. – volume: 6 start-page: 7866 issue: 1 year: 2015 ident: B27 article-title: A draft network of ligand-receptor-mediated multicellular signalling in human publication-title: Nat Commun. – volume: 12 start-page: 323 issue: 1 year: 2011 ident: B39 article-title: RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome publication-title: BMC Bioinform. – volume: 177 start-page: 1888 issue: 7 year: 2019 end-page: 1902.e21 ident: B17 article-title: Comprehensive integration of single-cell data publication-title: Cell. – volume: 31 start-page: 118 issue: 1 year: 2020 end-page: 138 ident: B13 article-title: Single-cell RNA sequencing reveals renal endothelium heterogeneity and metabolic adaptation to water deprivation publication-title: J Am Soc Nephrol. – volume: 184 start-page: 149 issue: 1 year: 2021 end-page: 168.e17 ident: B66 article-title: Synergism of TNF-α and IFN-γ triggers inflammatory cell death, tissue damage, and mortality in SARS-CoV-2 infection and cytokine shock syndromes publication-title: Cell. – volume: 10 start-page: 625 issue: 11 year: 2014 end-page: 643 ident: B21 article-title: Dendritic cells and macrophages in the kidney: a spectrum of good and evil publication-title: Nat Rev Nephrol. – volume: 19 start-page: 307 issue: 6 year: 2019 end-page: 325 ident: B3 article-title: Tertiary lymphoid structures in the era of cancer immunotherapy publication-title: Nat Rev Cancer. – volume: 3 start-page: e121886 issue: 18 year: 2018 ident: B65 article-title: Essential role of IFN-γ in T cell-associated intestinal inflammation publication-title: JCI Insight. – volume: 51 start-page: 399 issue: 3 year: 2019 end-page: 413.e7 ident: B25 article-title: Single-cell profiling reveals sex, lineage, and regional diversity in the mouse kidney publication-title: Dev Cell. – volume: 49 start-page: D545 issue: D1 year: 2021 end-page: D551 ident: B35 article-title: KEGG: integrating viruses and cellular organisms publication-title: Nucleic Acids Res. – volume: 148 start-page: 1169 issue: 4 year: 1996 end-page: 1180 ident: B44 article-title: Platelet-derived growth factor-BB induces renal tubulointerstitial myofibroblast formation and tubulointerstitial fibrosis publication-title: Am J Pathol. – volume: 89 start-page: 848 issue: 4 year: 2016 end-page: 861 ident: B45 article-title: The role of PDGF-D in healthy and fibrotic kidneys publication-title: Kidney Int. – volume: 44 start-page: W90 issue: W1 year: 2016 end-page: W97 ident: B32 article-title: Enrichr: a comprehensive gene set enrichment analysis web server 2016 update publication-title: Nucleic Acids Res. – volume: 30 start-page: 767 issue: 5 year: 2019 end-page: 781 ident: B22 article-title: Single-cell RNA sequencing identifies candidate renal resident macrophage gene expression signatures across species publication-title: J Am Soc Nephrol. – volume: 2012 start-page: 967584 year: 2012 ident: B8 article-title: Association of intrarenal B-Cell infiltrates with clinical outcome in lupus nephritis: a study of 192 cases publication-title: Clin Dev Immunol. – volume: 30 start-page: 712 issue: 4 year: 2019 end-page: 713 ident: B48 article-title: Complementary roles for single-nucleus and single-cell RNA sequencing in kidney disease research publication-title: J Am Soc Nephrol. – volume: 11 start-page: 976 year: 2020 ident: B50 article-title: CXCR3 ligands in cancer and autoimmunity, chemoattraction of effector T cells, and beyond publication-title: Front Immunol. – volume: 14 start-page: 1083 issue: 11 year: 2017 end-page: 1086 ident: B29 article-title: SCENIC: single-cell regulatory network inference and clustering publication-title: Nat Methods. – volume: 187 start-page: 655 issue: 4 year: 1998 end-page: 660 ident: B60 article-title: B cell-attracting chemokine 1, a human CXC chemokine expressed in lymphoid tissues, selectively attracts B lymphocytes via BLR1/CXCR5 publication-title: J Exp Med. – volume: 12 start-page: 790125 year: 2021 ident: B71 article-title: Janus kinase inhibitors in the treatment of vitiligo: a review publication-title: Front Immunol. – volume: 33 start-page: 186 issue: 1 year: 2022 end-page: 200 ident: B6 article-title: Advanced tertiary lymphoid tissues in protocol biopsies are associated with progressive graft dysfunction in kidney transplant recipients publication-title: J Am Soc Nephrol. – volume: 46 start-page: W242 issue: W1 year: 2018 end-page: W245 ident: B42 article-title: CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens publication-title: Nucleic Acids Res. – volume: 7 start-page: 345 issue: 1 year: 2014 ident: B53 article-title: Death associated protein kinase 2 is expressed in cortical interstitial cells of the mouse kidney publication-title: BMC Res Notes. – volume: 72 start-page: 579 issue: 4 year: 1996 end-page: 586 ident: B54 article-title: Tenascin is an ubiquitous extracellular matrix protein of human renal interstitium in normal and pathologic conditions publication-title: Nephron. – volume: 293 start-page: 2108 issue: 5537 year: 2001 end-page: 2111 ident: B61 article-title: BAFF-R, a newly identified TNF receptor that specifically interacts with BAFF publication-title: Science. – volume: 30 start-page: 1825 issue: 10 year: 2019 end-page: 1840 ident: B46 article-title: Tubular GM-CSF promotes late MCP-1/CCR2-mediated fibrosis and inflammation after ischemia/reperfusion injury publication-title: J Am Soc Nephrol. – volume: 15 start-page: 1484 issue: 4 year: 2020 end-page: 1506 ident: B28 article-title: CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes publication-title: Nat Protoc. – volume: 7 start-page: 7992 issue: 1 year: 2017 ident: B59 article-title: CREB3L2-mediated expression of Sec23A/Sec24D is involved in hepatic stellate cell activation through ER-Golgi transport publication-title: Sci Rep. – volume: 10 start-page: 1739 issue: 1 year: 2019 ident: B57 article-title: Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp publication-title: Nat Commun. – volume: 5 start-page: eaaw8330 issue: 8 year: 2019 ident: B23 article-title: Aging promotes reorganization of the CD4 T cell landscape toward extreme regulatory and effector phenotypes publication-title: Sci Adv. – volume: 10 start-page: 1232 issue: 8 year: 2021 end-page: 1248 ident: B56 article-title: Aging modulates the effects of ischemic injury upon mesenchymal cells within the renal interstitium and microvasculature publication-title: Stem Cells Transl Med. – volume: 13 start-page: 2022 issue: 1 year: 2022 ident: B73 article-title: Loss of vascular endothelial notch signaling promotes spontaneous formation of tertiary lymphoid structures publication-title: Nat Commun. – volume: 28 start-page: 3205 issue: 11 year: 2017 end-page: 3217 ident: B64 article-title: Hepatocyte nuclear factor-1β controls mitochondrial respiration in renal tubular cells publication-title: J Am Soc Nephrol. – volume: 25 start-page: 25 issue: 1 year: 2000 end-page: 29 ident: B36 article-title: Gene Ontology: tool for the unification of biology publication-title: Nat Genet. – volume: 589 start-page: 281 issue: 7841 year: 2021 end-page: 286 ident: B12 article-title: Decoding myofibroblast origins in human kidney fibrosis publication-title: Nature. – volume: 118 start-page: e2026684118 issue: 27 year: 2021 ident: B15 article-title: Single-nuclear transcriptomics reveals diversity of proximal tubule cell states in a dynamic response to acute kidney injury publication-title: Proc Natl Acad Sci U S A. – volume: 117 start-page: 15874 issue: 27 year: 2020 end-page: 15883 ident: B14 article-title: Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury publication-title: Proc Natl Acad Sci U S A. – volume: 29 start-page: 15 issue: 1 year: 2013 end-page: 21 ident: B38 article-title: STAR: ultrafast universal RNA-seq aligner publication-title: Bioinformatics. – volume: 30 start-page: 1358 issue: 8 year: 2019 end-page: 1364 ident: B20 article-title: Renal-tubule epithelial cell nomenclature for single-cell RNA-sequencing studies publication-title: J Am Soc Nephrol. – volume: 12 start-page: 2190 issue: 1 year: 2021 ident: B63 article-title: Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney publication-title: Nat Commun. – volume: 349 start-page: 125 issue: 2 year: 2003 end-page: 138 ident: B5 article-title: Molecular heterogeneity in acute renal allograft rejection identified by DNA microarray profiling publication-title: N Engl J Med. – volume: 15 start-page: 550 issue: 12 year: 2014 ident: B40 article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 publication-title: Genome Biol. – volume: 19 start-page: 525 issue: 8 year: 2023 end-page: 537 ident: B75 article-title: The roles of tertiary lymphoid structures in chronic diseases publication-title: Nat Rev Nephrol. – volume: 3 start-page: 3355 issue: 1 year: 2013 ident: B41 article-title: Generation of mutant mice by pronuclear injection of circular plasmid expressing Cas9 and single guided RNA publication-title: Sci Rep. – volume: 10 start-page: 16236 issue: 1 year: 2020 ident: B68 article-title: Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference publication-title: Sci Rep. – volume: 30 start-page: 23 issue: 1 year: 2019 end-page: 32 ident: B26 article-title: Advantages of single-nucleus over single-cell RNA sequencing of adult kidney: rare cell types and novel cell states revealed in fibrosis publication-title: J Am Soc Nephrol. – volume: 9 start-page: 164 issue: 3 year: 2013 end-page: 172 ident: B69 article-title: Immunogenicity of anti-TNF biologic therapies for rheumatoid arthritis publication-title: Nat Rev Rheumatol. – volume: 8 start-page: e79839 issue: 11 year: 2013 ident: B55 article-title: Generation of a tenascin-C-CreER2 knockin mouse line for conditional DNA recombination in renal medullary interstitial cells publication-title: PLoS One. – volume: 168 start-page: 3195 issue: 7 year: 2002 end-page: 3204 ident: B52 article-title: IFN-gamma-inducible protein 10 (IP-10; CXCL10)-deficient mice reveal a role for IP-10 in effector T cell generation and trafficking publication-title: J Immunol. – volume: 10 start-page: 2938 year: 2019 ident: B1 article-title: Chronic inflammation: a common promoter in tertiary lymphoid organ neogenesis publication-title: Front Immunol. – volume: 38 start-page: 26 issue: 1 year: 2021 end-page: 33 ident: B4 article-title: Tertiary lymphoid tissues: a regional hub for kidney inflammation publication-title: Nephrol Dial Transplant. – volume: 45 start-page: 97 year: 2017 end-page: 102 ident: B24 article-title: Plasma cell and memory B cell differentiation from the germinal center publication-title: Curr Opin Immunol. – volume: 189 start-page: 1747 issue: 11 year: 1999 end-page: 1756 ident: B62 article-title: BAFF, a novel ligand of the tumor necrosis factor family, stimulates B cell growth publication-title: J Exp Med. – volume: 13 start-page: 141 issue: 3 year: 2017 end-page: 154 ident: B2 article-title: Ectopic lymphoid neogenesis in rheumatic autoimmune diseases publication-title: Nat Rev Rheumatol. – volume: 1 start-page: e87680 issue: 11 year: 2016 ident: B9 article-title: Heterogeneous fibroblasts underlie age-dependent tertiary lymphoid tissues in the kidney publication-title: JCI Insight. – volume: 601 start-page: 118 issue: 7891 year: 2022 end-page: 124 ident: B67 article-title: Anatomically distinct fibroblast subsets determine skin autoimmune patterns publication-title: Nature. – volume: 13 start-page: 320 issue: 5 year: 2017 ident: B70 article-title: The emerging safety profile of JAK inhibitors in rheumatic disease publication-title: Nat Rev Rheumatol. – volume: 9 start-page: 255 issue: 2 year: 2014 end-page: 264 ident: B7 article-title: Renal interstitial infiltration and tertiary lymphoid organ neogenesis in IgA nephropathy publication-title: Clin J Am Soc Nephrol. – volume: 1 start-page: 298 issue: 4 year: 2000 end-page: 304 ident: B47 article-title: A transmembrane CXC chemokine is a ligand for HIV-coreceptor Bonzo publication-title: Nat Immunol. – volume: 8 start-page: 329 issue: 4 year: 2019 end-page: 337.e4 ident: B18 article-title: DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors publication-title: Cell Syst. – volume: 14 start-page: 128 issue: 1 year: 2013 ident: B31 article-title: Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool publication-title: BMC Bioinform. – volume: 169 start-page: 2685 issue: 5 year: 2002 end-page: 2693 ident: B51 article-title: Targeting the function of IFN-gamma-inducible protein 10 suppresses ongoing adjuvant arthritis publication-title: J Immunol. – volume: 28 start-page: 27 issue: 1 year: 2000 end-page: 30 ident: B34 article-title: KEGG: kyoto encyclopedia of genes and genomes publication-title: Nucleic Acids Res. – volume: 13 start-page: eabe0407 issue: 605 year: 2021 ident: B43 article-title: TGFβ2 and TGFβ3 isoforms drive fibrotic disease pathogenesis publication-title: Sci Transl Med. – volume: 17 start-page: 454 issue: 2 year: 2006 end-page: 464 ident: B49 article-title: Compartment-specific expression and function of the chemokine IP-10/CXCL10 in a model of renal endothelial microvascular injury publication-title: J Am Soc Nephrol. – volume: 116 start-page: 13490 issue: 27 year: 2019 end-page: 13497 ident: B72 article-title: Immunofibroblasts are pivotal drivers of tertiary lymphoid structure formation and local pathology publication-title: Proc Natl Acad Sci U S A. – volume: 14 start-page: 309 issue: 3 year: 2017 end-page: 315 ident: B30 article-title: Single-cell mRNA quantification and differential analysis with Census publication-title: Nat Methods. – volume: 9 start-page: giaa151 issue: 12 year: 2020 ident: B19 article-title: SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data publication-title: Gigascience. – volume: 22 start-page: 705 issue: 3 year: 2022 end-page: 716 ident: B74 article-title: Novel intragraft regulatory lymphoid structures in kidney allograft tolerance publication-title: Am J Transplant. – volume: 12 start-page: 6386 issue: 1 year: 2021 ident: B58 article-title: Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen publication-title: Nat Commun. – volume: 132 start-page: e146071 issue: 2 year: 2022 ident: B10 article-title: CD153/CD30 signaling promotes age-dependent tertiary lymphoid tissue expansion and kidney injury publication-title: J Clin Invest. – volume: 1 start-page: e90 issue: 3 year: 2021 ident: B33 article-title: Gene set knowledge discovery with Enrichr publication-title: Curr Protoc. – volume: 49 start-page: D325 issue: D1 year: 2021 end-page: D334 ident: B37 article-title: The Gene Ontology resource: enriching a GOld mine publication-title: Nucleic Acids Res. – volume: 360 start-page: 758 issue: 6390 year: 2018 end-page: 763 ident: B11 article-title: Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease publication-title: Science. – volume: 5 start-page: eaaw8330 issue: 8 year: 2019 ident: B23-20250823 article-title: Aging promotes reorganization of the CD4 T cell landscape toward extreme regulatory and effector phenotypes publication-title: Sci Adv. doi: 10.1126/sciadv.aaw8330 – volume: 1 start-page: 298 issue: 4 year: 2000 ident: B47-20250823 article-title: A transmembrane CXC chemokine is a ligand for HIV-coreceptor Bonzo publication-title: Nat Immunol. doi: 10.1038/79738 – volume: 33 start-page: 186 issue: 1 year: 2022 ident: B6-20250823 article-title: Advanced tertiary lymphoid tissues in protocol biopsies are associated with progressive graft dysfunction in kidney transplant recipients publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2021050715 – volume: 89 start-page: 848 issue: 4 year: 2016 ident: B45-20250823 article-title: The role of PDGF-D in healthy and fibrotic kidneys publication-title: Kidney Int. doi: 10.1016/j.kint.2015.12.037 – volume: 184 start-page: 149 issue: 1 year: 2021 ident: B66-20250823 article-title: Synergism of TNF-α and IFN-γ triggers inflammatory cell death, tissue damage, and mortality in SARS-CoV-2 infection and cytokine shock syndromes publication-title: Cell. doi: 10.1016/j.cell.2020.11.025 – volume: 9 start-page: 164 issue: 3 year: 2013 ident: B69-20250823 article-title: Immunogenicity of anti-TNF biologic therapies for rheumatoid arthritis publication-title: Nat Rev Rheumatol. doi: 10.1038/nrrheum.2013.4 – volume: 132 start-page: e146071 issue: 2 year: 2022 ident: B10-20250823 article-title: CD153/CD30 signaling promotes age-dependent tertiary lymphoid tissue expansion and kidney injury publication-title: J Clin Invest. doi: 10.1172/JCI146071 – volume: 13 start-page: eabe0407 issue: 605 year: 2021 ident: B43-20250823 article-title: TGFβ2 and TGFβ3 isoforms drive fibrotic disease pathogenesis publication-title: Sci Transl Med. doi: 10.1126/scitranslmed.abe0407 – volume: 30 start-page: 1825 issue: 10 year: 2019 ident: B46-20250823 article-title: Tubular GM-CSF promotes late MCP-1/CCR2-mediated fibrosis and inflammation after ischemia/reperfusion injury publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2019010068 – volume: 177 start-page: 1888 issue: 7 year: 2019 ident: B17-20250823 article-title: Comprehensive integration of single-cell data publication-title: Cell. doi: 10.1016/j.cell.2019.05.031 – volume: 29 start-page: 15 issue: 1 year: 2013 ident: B38-20250823 article-title: STAR: ultrafast universal RNA-seq aligner publication-title: Bioinformatics. doi: 10.1093/bioinformatics/bts635 – volume: 2012 start-page: 967584 year: 2012 ident: B8-20250823 article-title: Association of intrarenal B-Cell infiltrates with clinical outcome in lupus nephritis: a study of 192 cases publication-title: Clin Dev Immunol. doi: 10.1155/2012/967584 – volume: 28 start-page: 3205 issue: 11 year: 2017 ident: B64-20250823 article-title: Hepatocyte nuclear factor-1β controls mitochondrial respiration in renal tubular cells publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2016050508 – volume: 8 start-page: e79839 issue: 11 year: 2013 ident: B55-20250823 article-title: Generation of a tenascin-C-CreER2 knockin mouse line for conditional DNA recombination in renal medullary interstitial cells publication-title: PLoS One. doi: 10.1371/journal.pone.0079839 – volume: 12 start-page: 790125 year: 2021 ident: B71-20250823 article-title: Janus kinase inhibitors in the treatment of vitiligo: a review publication-title: Front Immunol. doi: 10.3389/fimmu.2021.790125 – volume: 117 start-page: 15874 issue: 27 year: 2020 ident: B14-20250823 article-title: Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury publication-title: Proc Natl Acad Sci U S A. doi: 10.1073/pnas.2005477117 – volume: 10 start-page: 16236 issue: 1 year: 2020 ident: B68-20250823 article-title: Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference publication-title: Sci Rep. doi: 10.1038/s41598-020-73147-4 – volume: 3 start-page: e121886 issue: 18 year: 2018 ident: B65-20250823 article-title: Essential role of IFN-γ in T cell-associated intestinal inflammation publication-title: JCI Insight. doi: 10.1172/jci.insight.121886 – volume: 45 start-page: 97 year: 2017 ident: B24-20250823 article-title: Plasma cell and memory B cell differentiation from the germinal center publication-title: Curr Opin Immunol. doi: 10.1016/j.coi.2017.03.006 – volume: 19 start-page: 307 issue: 6 year: 2019 ident: B3-20250823 article-title: Tertiary lymphoid structures in the era of cancer immunotherapy publication-title: Nat Rev Cancer. doi: 10.1038/s41568-019-0144-6 – volume: 46 start-page: W242 issue: W1 year: 2018 ident: B42-20250823 article-title: CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens publication-title: Nucleic Acids Res. doi: 10.1093/nar/gky354 – volume: 12 start-page: 6386 issue: 1 year: 2021 ident: B58-20250823 article-title: Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen publication-title: Nat Commun. doi: 10.1038/s41467-021-26530-2 – volume: 13 start-page: 141 issue: 3 year: 2017 ident: B2-20250823 article-title: Ectopic lymphoid neogenesis in rheumatic autoimmune diseases publication-title: Nat Rev Rheumatol. doi: 10.1038/nrrheum.2016.217 – volume: 14 start-page: 1083 issue: 11 year: 2017 ident: B29-20250823 article-title: SCENIC: single-cell regulatory network inference and clustering publication-title: Nat Methods. doi: 10.1038/nmeth.4463 – volume: 14 start-page: 128 issue: 1 year: 2013 ident: B31-20250823 article-title: Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool publication-title: BMC Bioinform. doi: 10.1186/1471-2105-14-128 – volume: 118 start-page: e2026684118 issue: 27 year: 2021 ident: B15-20250823 article-title: Single-nuclear transcriptomics reveals diversity of proximal tubule cell states in a dynamic response to acute kidney injury publication-title: Proc Natl Acad Sci U S A. doi: 10.1073/pnas.2026684118 – volume: 3 start-page: 3355 issue: 1 year: 2013 ident: B41-20250823 article-title: Generation of mutant mice by pronuclear injection of circular plasmid expressing Cas9 and single guided RNA publication-title: Sci Rep. doi: 10.1038/srep03355 – volume: 10 start-page: 1232 issue: 8 year: 2021 ident: B56-20250823 article-title: Aging modulates the effects of ischemic injury upon mesenchymal cells within the renal interstitium and microvasculature publication-title: Stem Cells Transl Med. doi: 10.1002/sctm.20-0392 – volume: 148 start-page: 1169 issue: 4 year: 1996 ident: B44-20250823 article-title: Platelet-derived growth factor-BB induces renal tubulointerstitial myofibroblast formation and tubulointerstitial fibrosis publication-title: Am J Pathol. – volume: 360 start-page: 758 issue: 6390 year: 2018 ident: B11-20250823 article-title: Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease publication-title: Science. doi: 10.1126/science.aar2131 – volume: 15 start-page: 1484 issue: 4 year: 2020 ident: B28-20250823 article-title: CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes publication-title: Nat Protoc. doi: 10.1038/s41596-020-0292-x – volume: 98 start-page: 448 year: 2020 ident: B16-20250823 article-title: Developmental stages of tertiary lymphoid tissue reflect local injury and inflammation in mouse and human kidneys publication-title: Kidney Int. doi: 10.1016/j.kint.2020.02.023 – volume: 10 start-page: 625 issue: 11 year: 2014 ident: B21-20250823 article-title: Dendritic cells and macrophages in the kidney: a spectrum of good and evil publication-title: Nat Rev Nephrol. doi: 10.1038/nrneph.2014.170 – volume: 187 start-page: 655 issue: 4 year: 1998 ident: B60-20250823 article-title: B cell-attracting chemokine 1, a human CXC chemokine expressed in lymphoid tissues, selectively attracts B lymphocytes via BLR1/CXCR5 publication-title: J Exp Med. doi: 10.1084/jem.187.4.655 – volume: 349 start-page: 125 issue: 2 year: 2003 ident: B5-20250823 article-title: Molecular heterogeneity in acute renal allograft rejection identified by DNA microarray profiling publication-title: N Engl J Med. doi: 10.1056/NEJMoa035588 – volume: 589 start-page: 281 issue: 7841 year: 2021 ident: B12-20250823 article-title: Decoding myofibroblast origins in human kidney fibrosis publication-title: Nature. doi: 10.1038/s41586-020-2941-1 – volume: 30 start-page: 23 issue: 1 year: 2019 ident: B26-20250823 article-title: Advantages of single-nucleus over single-cell RNA sequencing of adult kidney: rare cell types and novel cell states revealed in fibrosis publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2018090912 – volume: 293 start-page: 2108 issue: 5537 year: 2001 ident: B61-20250823 article-title: BAFF-R, a newly identified TNF receptor that specifically interacts with BAFF publication-title: Science. doi: 10.1126/science.1061965 – volume: 13 start-page: 320 issue: 5 year: 2017 ident: B70-20250823 article-title: The emerging safety profile of JAK inhibitors in rheumatic disease publication-title: Nat Rev Rheumatol. doi: 10.1038/nrrheum.2017.51 – volume: 25 start-page: 25 issue: 1 year: 2000 ident: B36-20250823 article-title: Gene Ontology: tool for the unification of biology publication-title: Nat Genet. doi: 10.1038/75556 – volume: 38 start-page: 26 issue: 1 year: 2021 ident: B4-20250823 article-title: Tertiary lymphoid tissues: a regional hub for kidney inflammation publication-title: Nephrol Dial Transplant. doi: 10.1093/ndt/gfab212 – volume: 49 start-page: D325 issue: D1 year: 2021 ident: B37-20250823 article-title: The Gene Ontology resource: enriching a GOld mine publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkaa1113 – volume: 8 start-page: 329 issue: 4 year: 2019 ident: B18-20250823 article-title: DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors publication-title: Cell Syst. doi: 10.1016/j.cels.2019.03.003 – volume: 9 start-page: giaa151 issue: 12 year: 2020 ident: B19-20250823 article-title: SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data publication-title: Gigascience. doi: 10.1093/gigascience/giaa151 – volume: 10 start-page: 1739 issue: 1 year: 2019 ident: B57-20250823 article-title: Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp publication-title: Nat Commun. doi: 10.1038/s41467-019-09728-3 – volume: 44 start-page: W90 issue: W1 year: 2016 ident: B32-20250823 article-title: Enrichr: a comprehensive gene set enrichment analysis web server 2016 update publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkw377 – volume: 51 start-page: 399 issue: 3 year: 2019 ident: B25-20250823 article-title: Single-cell profiling reveals sex, lineage, and regional diversity in the mouse kidney publication-title: Dev Cell. doi: 10.1016/j.devcel.2019.10.005 – volume: 116 start-page: 13490 issue: 27 year: 2019 ident: B72-20250823 article-title: Immunofibroblasts are pivotal drivers of tertiary lymphoid structure formation and local pathology publication-title: Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1905301116 – volume: 12 start-page: 323 issue: 1 year: 2011 ident: B39-20250823 article-title: RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome publication-title: BMC Bioinform. doi: 10.1186/1471-2105-12-323 – volume: 49 start-page: D545 issue: D1 year: 2021 ident: B35-20250823 article-title: KEGG: integrating viruses and cellular organisms publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkaa970 – volume: 601 start-page: 118 issue: 7891 year: 2022 ident: B67-20250823 article-title: Anatomically distinct fibroblast subsets determine skin autoimmune patterns publication-title: Nature. doi: 10.1038/s41586-021-04221-8 – volume: 6 start-page: 7866 issue: 1 year: 2015 ident: B27-20250823 article-title: A draft network of ligand-receptor-mediated multicellular signalling in human publication-title: Nat Commun. doi: 10.1038/ncomms8866 – volume: 15 start-page: 550 issue: 12 year: 2014 ident: B40-20250823 article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 publication-title: Genome Biol. doi: 10.1186/s13059-014-0550-8 – volume: 17 start-page: 454 issue: 2 year: 2006 ident: B49-20250823 article-title: Compartment-specific expression and function of the chemokine IP-10/CXCL10 in a model of renal endothelial microvascular injury publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2005040364 – volume: 1 start-page: e87680 issue: 11 year: 2016 ident: B9-20250823 article-title: Heterogeneous fibroblasts underlie age-dependent tertiary lymphoid tissues in the kidney publication-title: JCI Insight. doi: 10.1172/jci.insight.87680 – volume: 9 start-page: 255 issue: 2 year: 2014 ident: B7-20250823 article-title: Renal interstitial infiltration and tertiary lymphoid organ neogenesis in IgA nephropathy publication-title: Clin J Am Soc Nephrol. doi: 10.2215/CJN.01150113 – volume: 28 start-page: 27 issue: 1 year: 2000 ident: B34-20250823 article-title: KEGG: kyoto encyclopedia of genes and genomes publication-title: Nucleic Acids Res. doi: 10.1093/nar/28.1.27 – volume: 7 start-page: 345 issue: 1 year: 2014 ident: B53-20250823 article-title: Death associated protein kinase 2 is expressed in cortical interstitial cells of the mouse kidney publication-title: BMC Res Notes. doi: 10.1186/1756-0500-7-345 – volume: 11 start-page: 976 year: 2020 ident: B50-20250823 article-title: CXCR3 ligands in cancer and autoimmunity, chemoattraction of effector T cells, and beyond publication-title: Front Immunol. doi: 10.3389/fimmu.2020.00976 – volume: 31 start-page: 118 issue: 1 year: 2020 ident: B13-20250823 article-title: Single-cell RNA sequencing reveals renal endothelium heterogeneity and metabolic adaptation to water deprivation publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2019080832 – volume: 168 start-page: 3195 issue: 7 year: 2002 ident: B52-20250823 article-title: IFN-gamma-inducible protein 10 (IP-10; CXCL10)-deficient mice reveal a role for IP-10 in effector T cell generation and trafficking publication-title: J Immunol. doi: 10.4049/jimmunol.168.7.3195 – volume: 1 start-page: e90 issue: 3 year: 2021 ident: B33-20250823 article-title: Gene set knowledge discovery with Enrichr publication-title: Curr Protoc. doi: 10.1002/cpz1.90 – volume: 30 start-page: 712 issue: 4 year: 2019 ident: B48-20250823 article-title: Complementary roles for single-nucleus and single-cell RNA sequencing in kidney disease research publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2019020112 – volume: 22 start-page: 705 issue: 3 year: 2022 ident: B74-20250823 article-title: Novel intragraft regulatory lymphoid structures in kidney allograft tolerance publication-title: Am J Transplant. doi: 10.1111/ajt.16880 – volume: 30 start-page: 1358 issue: 8 year: 2019 ident: B20-20250823 article-title: Renal-tubule epithelial cell nomenclature for single-cell RNA-sequencing studies publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2019040415 – volume: 12 start-page: 2190 issue: 1 year: 2021 ident: B63-20250823 article-title: Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney publication-title: Nat Commun. doi: 10.1038/s41467-021-22368-w – volume: 13 start-page: 2022 issue: 1 year: 2022 ident: B73-20250823 article-title: Loss of vascular endothelial notch signaling promotes spontaneous formation of tertiary lymphoid structures publication-title: Nat Commun. doi: 10.1038/s41467-022-29701-x – volume: 10 start-page: 2938 year: 2019 ident: B1-20250823 article-title: Chronic inflammation: a common promoter in tertiary lymphoid organ neogenesis publication-title: Front Immunol. doi: 10.3389/fimmu.2019.02938 – volume: 30 start-page: 767 issue: 5 year: 2019 ident: B22-20250823 article-title: Single-cell RNA sequencing identifies candidate renal resident macrophage gene expression signatures across species publication-title: J Am Soc Nephrol. doi: 10.1681/ASN.2018090931 – volume: 169 start-page: 2685 issue: 5 year: 2002 ident: B51-20250823 article-title: Targeting the function of IFN-gamma-inducible protein 10 suppresses ongoing adjuvant arthritis publication-title: J Immunol. doi: 10.4049/jimmunol.169.5.2685 – volume: 7 start-page: 7992 issue: 1 year: 2017 ident: B59-20250823 article-title: CREB3L2-mediated expression of Sec23A/Sec24D is involved in hepatic stellate cell activation through ER-Golgi transport publication-title: Sci Rep. doi: 10.1038/s41598-017-08703-6 – volume: 19 start-page: 525 issue: 8 year: 2023 ident: B75-20250823 article-title: The roles of tertiary lymphoid structures in chronic diseases publication-title: Nat Rev Nephrol. doi: 10.1038/s41581-023-00706-z – volume: 14 start-page: 309 issue: 3 year: 2017 ident: B30-20250823 article-title: Single-cell mRNA quantification and differential analysis with Census publication-title: Nat Methods. doi: 10.1038/nmeth.4150 – volume: 189 start-page: 1747 issue: 11 year: 1999 ident: B62-20250823 article-title: BAFF, a novel ligand of the tumor necrosis factor family, stimulates B cell growth publication-title: J Exp Med. doi: 10.1084/jem.189.11.1747 – volume: 72 start-page: 579 issue: 4 year: 1996 ident: B54-20250823 article-title: Tenascin is an ubiquitous extracellular matrix protein of human renal interstitium in normal and pathologic conditions publication-title: Nephron. doi: 10.1159/000188943 – reference: 37782545 - J Am Soc Nephrol. 2023 Oct 1;34(10):1603-1604. doi: 10.1681/ASN.0000000000000216  | 
    
| SSID | ssj0015277 | 
    
| Score | 2.5569608 | 
    
| Snippet | Visual Abstract
Significance StatementEctopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated... Ectopic lymphoid structures called tertiary lymphoid tissues (TLTs) develop in several kidney diseases and are associated with poor renal prognosis. However,...  | 
    
| SourceID | unpaywall pubmedcentral proquest pubmed crossref wolterskluwer  | 
    
| SourceType | Open Access Repository Aggregation Database Index Database Enrichment Source Publisher  | 
    
| StartPage | 1687 | 
    
| SubjectTerms | Animals Basic Research Chemokine CXCL10 Chemokine CXCL9 Chemokines - metabolism Cytokines Humans Inflammation Interferon-gamma Kidney - metabolism Lymphoid Tissue - metabolism Mice Receptors, CXCR3 Renal Repair  | 
    
| Title | Tertiary Lymphoid Tissues Are Microenvironments with Intensive Interactions between Immune Cells and Proinflammatory Parenchymal Cells in Aged Kidneys | 
    
| URI | https://ovidsp.ovid.com/ovidweb.cgi?T=JS&NEWS=n&CSC=Y&PAGE=fulltext&D=ovft&DO=10.1681/ASN.0000000000000202 https://www.ncbi.nlm.nih.gov/pubmed/37548710 https://www.proquest.com/docview/2847341452 https://pubmed.ncbi.nlm.nih.gov/PMC10561819 https://doi.org/10.1681/asn.0000000000000202  | 
    
| UnpaywallVersion | publishedVersion | 
    
| Volume | 34 | 
    
| hasFullText | 1 | 
    
| inHoldings | 1 | 
    
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVAFT databaseName: Open Access Digital Library customDbUrl: eissn: 1533-3450 dateEnd: 99991231 omitProxy: true ssIdentifier: ssj0015277 issn: 1533-3450 databaseCode: KQ8 dateStart: 19900701 isFulltext: true titleUrlDefault: http://grweb.coalliance.org/oadl/oadl.html providerName: Colorado Alliance of Research Libraries – providerCode: PRVBFR databaseName: Free Medical Journals customDbUrl: eissn: 1533-3450 dateEnd: 20241102 omitProxy: true ssIdentifier: ssj0015277 issn: 1533-3450 databaseCode: DIK dateStart: 19900101 isFulltext: true titleUrlDefault: http://www.freemedicaljournals.com providerName: Flying Publisher – providerCode: PRVFQY databaseName: GFMER Free Medical Journals customDbUrl: eissn: 1533-3450 dateEnd: 99991231 omitProxy: true ssIdentifier: ssj0015277 issn: 1533-3450 databaseCode: GX1 dateStart: 0 isFulltext: true titleUrlDefault: http://www.gfmer.ch/Medical_journals/Free_medical.php providerName: Geneva Foundation for Medical Education and Research – providerCode: PRVAQN databaseName: PubMed Central customDbUrl: eissn: 1533-3450 dateEnd: 20241102 omitProxy: true ssIdentifier: ssj0015277 issn: 1533-3450 databaseCode: RPM dateStart: 20080101 isFulltext: true titleUrlDefault: https://www.ncbi.nlm.nih.gov/pmc/ providerName: National Library of Medicine  | 
    
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1ba9swFBYlha4wdunaLm1XNNjjlMWWLMePoaz0soTAEuiejCzJbWgqlzihZD9kv3dHlm2Spt3FD8ZgSdblEzrH-s4nhD7piKWRZpKwUCjCKOdESMlIFMm2UEykvrIBzr0-Pxuxi6vgagN9rmJhlvfvecf7InLjJAary7fKkZs8AMu7gTZH_UH3hxMc4MSeYOnkUSmhLGiXkXLPFbO6Eq2Zl-ssyRdzcy8WD2ICzy8fMrubnd8WZPalJen0NepVjXFMlNvWfJa05M9HOo__2to36FVpm-KuA9NbtKHNDtrqlbvv79CvoSVhi-kCf1sACLKxwsNi3HLIo3HPcvuWA-ew_cmLa5J88TR1gRQ5Lgli-NwGqGh8oieTHAuj8GCaAeoBqHcFAQAPbLiavFncQdVcqrHB3Wut8OVYGQDiLhqdfh2enJHyXAciAw4GfeQp4QMqVOgzKViklB9GkqlUa54G2tMiEWHIlY46qdXjBx-ICUlDT-qAqYTSPdQwmdHvEU4SMHckuHDUlyzxPNEOU5VSRf0UFt6g3US0GuNYlqLn9uyNSWydH-jyuPu9Hz_u8iYida57J_rxl_QfK_jEMDvtloswOpvnsV38wU5gAaTZd3CqS7SHD0PjoI6dFaDVCazy9-obM74pFMA96_eBLddErRqTazUFMD1RU28FuLGLtv1j6w7-9yOHaBvuJeXxCDVm07n-AKbbLDkGp-X88rict78B69w5Cw | 
    
| linkProvider | Unpaywall | 
    
| linkToUnpaywall | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1ba9swFD6UFLbB2P2S3dBgj1MWW7IcP4ay0l0SAkugezKyJK-hqVzihJL9kP3eHVm2SZpd_WAMlmRdPqFzrO98AnhjEp4nhivKY6kpZ0JQqRSnSaL6UnOZh9oFOI_G4mTGP55GpwfwtomF2d6_F4PgnSytlxhsrtApRx6KCC3vDhzOxpPhVy84IKg7wdLLozLKeNSvI-V-V8zuSrRnXu6zJG-u7aXcXMkFPt--Ktxudnlekdm3lqTjuzBqGuOZKOe99Srrqe_XdB7_tbX34E5tm5KhB9N9ODD2AdwY1bvvD-HH1JGw5XJDPm8QBMVck2k1biXmMWTkuH3bgXPE_eQlLUm-elr6QIqS1AQx8sEFqBhyZBaLkkiryWRZIOoRqBcVAYBMXLiaOttcYNV8qrklw29Gk09zbRGIj2B2_H56dELrcx2oigQa9EmgZYio0HHIleSJ1mGcKK5zY0QemcDITMax0CYZ5E6PH30gLhWLA2UirjPGHkPHFtY8BZJlaO4odOFYqHgWBLIf5zpnmoU5LrxRvwusGeNU1aLn7uyNReqcH-zydPhlnF7v8i7QNtelF_34S_rXDXxSnJ1uy0VaU6zL1C3-aCfwCNM88XBqS3SHD2PjsI6DHaC1CZzy9-4bOz-rFMAD5_ehLdeFXovJvZoimH5R02AHuKmPtv1j657970eewy2815THF9BZLdfmJZpuq-xVPWN_AptQOBI | 
    
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Tertiary+Lymphoid+Tissues+Are+Microenvironments+with+Intensive+Interactions+between+Immune+Cells+and+Proinflammatory+Parenchymal+Cells+in+Aged+Kidneys&rft.jtitle=Journal+of+the+American+Society+of+Nephrology&rft.au=Yoshikawa%2C+Takahisa&rft.au=Oguchi%2C+Akiko&rft.au=Toriu%2C+Naoya&rft.au=Sato%2C+Yuki&rft.date=2023-10-01&rft.pub=American+Society+of+Nephrology&rft.issn=1046-6673&rft.eissn=1533-3450&rft.volume=34&rft.issue=10&rft.spage=1687&rft.epage=1708&rft_id=info:doi/10.1681%2FASN.0000000000000202&rft.externalDBID=NO_PDF_LINK&rft.externalDocID=JASN-2023-000372 | 
    
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1046-6673&client=summon | 
    
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1046-6673&client=summon | 
    
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1046-6673&client=summon |