Jasmonate induced alternative splicing responses in Arabidopsis
Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ) repressors is well‐characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonat...
Saved in:
| Published in | Plant direct Vol. 4; no. 8; pp. e00245 - n/a |
|---|---|
| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
John Wiley & Sons, Inc
01.08.2020
John Wiley and Sons Inc Wiley |
| Subjects | |
| Online Access | Get full text |
| ISSN | 2475-4455 2475-4455 |
| DOI | 10.1002/pld3.245 |
Cover
| Abstract | Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ) repressors is well‐characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three Arabidopsis genotypes (WT, jaz2, jaz7) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA‐ and RNA‐binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty‐one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of bHLH160 generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators.
Significance statement
By exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA‐mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants. |
|---|---|
| AbstractList | Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM-domain (JAZ) repressors is well-characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three
genotypes (WT,
,
) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes,
and
whose products have both DNA- and RNA-binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty-one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of
generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators.
By exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA-mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants. Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ) repressors is well‐characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three Arabidopsis genotypes (WT, jaz2, jaz7) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA‐ and RNA‐binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty‐one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of bHLH160 generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators.Significance statementBy exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA‐mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants. Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ) repressors is well‐characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three Arabidopsis genotypes (WT, jaz2, jaz7) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA‐ and RNA‐binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty‐one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of bHLH160 generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators. SIGNIFICANCE STATEMENT: By exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA‐mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants. Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ) repressors is well‐characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three Arabidopsis genotypes (WT, jaz2, jaz7) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA‐ and RNA‐binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty‐one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of bHLH160 generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators. Significance statement By exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA‐mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants. Abstract Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ) repressors is well‐characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three Arabidopsis genotypes (WT, jaz2, jaz7) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA‐ and RNA‐binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty‐one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of bHLH160 generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators. Significance statement By exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA‐mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants. Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM-domain (JAZ) repressors is well-characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three Arabidopsis genotypes (WT, jaz2, jaz7) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA- and RNA-binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty-one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of bHLH160 generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators.Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM-domain (JAZ) repressors is well-characterized and plays an important role in jasmonate signaling regulation. However, it is unknown whether other genes in the jasmonate signaling pathway are regulated by AS. We explore the potential for AS regulation in three Arabidopsis genotypes (WT, jaz2, jaz7) in response to methyl jasmonate (MeJA) treatment with respect to: (a) differential AS, (b) differential miRNA targeted AS, and (c) AS isoforms with novel functions. AS events identified from transcriptomic data were validated with proteomic data. Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA- and RNA-binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation. We observed cases where AS alone, or AS and transcriptional regulation together, can influence gene expression in response to MeJA. Twenty-one genes contain predicted miRNA target sites subjected to AS, which implies that AS is coupled to miRNA regulation. We identified 30 cases where alternatively spliced isoforms may have novel functions. For example, AS of bHLH160 generates an isoform without a basic domain, which may convert it from an activator to a repressor. Our study identified potential key regulators in AS regulation of jasmonate signaling pathway. These findings highlight the importance of AS regulation in the jasmonate signaling pathway, both alone and in collaboration with other regulators.By exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA-mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants.SIGNIFICANCE STATEMENTBy exploring alternative splicing, we demonstrate its regulation in the jasmonate signaling pathway alone or in collaboration with other posttranscriptional regulations such as nonsense and microRNA-mediated decay. A signal transduction network model for alternative splicing in jasmonate signaling pathway was generated, contributing to our understanding for this important, prevalent, but relatively unexplored regulatory mechanism in plants. |
| Author | Yoo, Mi‐Jeong Barbazuk, W. Brad Boatwright, J. Lucas Chen, Sixue Koh, Jin Davenport, Ruth Feng, Guanqiao |
| AuthorAffiliation | 1 Plant Molecular and Cellular Biology Program University of Florida Gainesville FL USA 2 Department of Biology University of Florida Gainesville FL USA 3 The Interdisciplinary Center for Biotechnology Research (ICBR) University of Florida Gainesville FL USA 4 The Genetics Institute University of Florida Gainesville FL USA |
| AuthorAffiliation_xml | – name: 4 The Genetics Institute University of Florida Gainesville FL USA – name: 3 The Interdisciplinary Center for Biotechnology Research (ICBR) University of Florida Gainesville FL USA – name: 1 Plant Molecular and Cellular Biology Program University of Florida Gainesville FL USA – name: 2 Department of Biology University of Florida Gainesville FL USA |
| Author_xml | – sequence: 1 givenname: Guanqiao surname: Feng fullname: Feng, Guanqiao organization: University of Florida – sequence: 2 givenname: Mi‐Jeong surname: Yoo fullname: Yoo, Mi‐Jeong organization: University of Florida – sequence: 3 givenname: Ruth surname: Davenport fullname: Davenport, Ruth organization: University of Florida – sequence: 4 givenname: J. Lucas surname: Boatwright fullname: Boatwright, J. Lucas organization: University of Florida – sequence: 5 givenname: Jin surname: Koh fullname: Koh, Jin organization: University of Florida – sequence: 6 givenname: Sixue surname: Chen fullname: Chen, Sixue organization: University of Florida – sequence: 7 givenname: W. Brad surname: Barbazuk fullname: Barbazuk, W. Brad email: bbarbazuk@ufl.edu organization: University of Florida |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32875268$$D View this record in MEDLINE/PubMed |
| BookMark | eNqFkktv1DAQgCNUREupxC9AkbhwyeL4nQuoKq-ileDQu-XHZPHKGwc7adV_j8OW0lY8TmPZ33z2eOZpdTDEAarqeYtWLUL49RgcWWHKHlVHmArWUMrYwZ31YXWS8xYVtBUcSfakOiRYCoa5PKreftZ5Fwc9Qe0HN1twtQ4TpLLjL6HOY_DWD5s6QR7jkCEXrD5N2ngXx-zzs-pxr0OGk5t4XF18eH9x9qlZf_l4fna6bizjjDVWtFKDEdQQACQ6LLUgqHOEGyQooshpYqwUHTJMyp5zYoTB2vKeSDCcHFfne62LeqvG5Hc6Xauovfq5EdNG6TR5G0CxFjvXdQZR6GlHXSeIkOUyxiwSmqHierN3jbPZgbMwTEmHe9L7J4P_pjbxUgnKUCtoEby6EaT4fYY8qZ3PFkLQA8Q5K1yKJZhjKv-PUtJxTEoo6MsH6DbOpQ9hoSiXlOCW_5siUhaStIV6cbfE29p-9f33u2yKOSfob5EWqWWq1DJVRckKunqAWj-V6YjL5_jwp4Rmn3DlA1z_Vay-rt-Rhf8B-O7Z1A |
| CitedBy_id | crossref_primary_10_1016_j_indcrop_2024_120372 crossref_primary_10_1093_jxb_erac387 crossref_primary_10_1093_aob_mcac123 crossref_primary_10_1111_plb_13676 crossref_primary_10_1111_mpp_70044 crossref_primary_10_3390_ijms23137239 crossref_primary_10_1111_ppl_13922 crossref_primary_10_1080_07352689_2022_2109866 crossref_primary_10_1080_15592324_2021_1917170 crossref_primary_10_1111_mpp_13228 crossref_primary_10_3390_ijms222212197 crossref_primary_10_1007_s13562_024_00909_w |
| Cites_doi | 10.1021/pr500739v 10.1104/pp.110.153593 10.1016/S1535-6108(03)00141-7 10.1101/gr.053678.106 10.1242/dev.02801 10.1038/nchembio.161 10.1111/j.1365-313X.2011.04882.x 10.1105/tpc.111.090431 10.1038/nbt.2450 10.1105/tpc.108.060137 10.1074/mcp.T600050-MCP200 10.1093/nar/gkx267 10.1093/nar/gku1221 10.1093/nar/gku1003 10.1093/nar/gkm311 10.1105/tpc.113.117523 10.1038/nature06006 10.1073/pnas.1616938114 10.1105/tpc.110.075242 10.1111/j.1365-313X.2009.03852.x 10.1093/bioinformatics/bts356 10.1016/j.molp.2018.12.017 10.1101/gad.1894310 10.1146/annurev-phyto-080516-035451 10.1093/jexbot/52.359.1375 10.1104/pp.107.115683 10.1038/nature05960 10.1186/1939-8433-6-8 10.1104/pp.114.239004 10.1111/tpj.13539 10.1105/tpc.113.113803 10.1038/nature08854 10.1242/dev.138602 10.1093/nar/gku949 10.1105/tpc.15.00110 10.1104/pp.109.135582 10.1242/dev.02521 10.1093/pcp/pch198 10.1093/oxfordjournals.jbchem.a022463 10.1093/bioinformatics/btq057 10.1073/pnas.1409791111 10.1093/nar/gkt1181 10.1016/j.pbi.2008.05.004 10.1105/tpc.111.083089 10.1105/tpc.112.100081 10.1007/s00299-011-1180-1 10.1104/pp.18.00173 10.1186/gb-2011-12-4-221 10.1093/jxb/erv281 10.1093/nar/gkr932 10.1104/pp.111.186999 10.1093/jxb/erv487 10.1111/nph.12292 10.1093/jxb/erw202 10.1111/tpj.12841 10.1105/tpc.108.064097 10.1105/tpc.113.117838 10.1186/s12915-017-0422-2 10.1093/gbe/evx056 10.1111/j.1469-8137.2012.04251.x 10.1111/j.1365-313X.2010.04265.x 10.1038/nrm3454 10.1038/nprot.2013.084 10.1105/tpc.15.00116 10.1016/j.pbi.2016.07.005 10.1104/pp.113.218164 10.1111/j.1469-8137.2009.03032.x 10.1105/tpc.111.093005 10.1105/tpc.113.112631 10.1016/j.molp.2015.01.011 10.1007/s00299-013-1540-0 10.3390/biom5031717 10.1371/journal.pgen.1005300 10.1126/science.1155390 10.1016/j.stem.2012.01.017 10.1101/gr.1239303 10.1016/j.molp.2016.04.011 10.1038/nrm3525 10.1105/tpc.106.042705 10.1016/j.ygeno.2011.05.002 10.1105/tpc.107.050708 10.1093/jxb/erw040 10.1146/annurev.arplant.59.032607.092825 10.1093/nar/gkr319 10.1104/pp.15.01267 10.1016/j.cell.2009.01.046 |
| ContentType | Journal Article |
| Copyright | 2020 The Authors. published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd 2020 The Authors. Plant Direct published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd. 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. |
| Copyright_xml | – notice: 2020 The Authors. published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd – notice: 2020 The Authors. Plant Direct published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd. – notice: 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. |
| DBID | 24P AAYXX CITATION NPM 8FE 8FH ABUWG AFKRA AZQEC BBNVY BENPR BHPHI CCPQU DWQXO GNUQQ HCIFZ LK8 M7P PHGZM PHGZT PIMPY PKEHL PQEST PQGLB PQQKQ PQUKI PRINS 7X8 7S9 L.6 5PM DOA |
| DOI | 10.1002/pld3.245 |
| DatabaseName | Wiley Online Library Open Access CrossRef PubMed ProQuest SciTech Collection ProQuest Natural Science Collection ProQuest Central (Alumni) ProQuest Central UK/Ireland ProQuest Central Essentials Biological Science Collection ProQuest Central Natural Science Collection ProQuest One ProQuest Central Korea ProQuest Central Student SciTech Premium Collection Biological Sciences Biological Science Database Proquest Central Premium ProQuest One Academic (New) ProQuest Publicly Available Content Database ProQuest One Academic Middle East (New) ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Applied & Life Sciences ProQuest One Academic ProQuest One Academic UKI Edition ProQuest Central China MEDLINE - Academic AGRICOLA AGRICOLA - Academic PubMed Central (Full Participant titles) DOAJ Directory of Open Access Journals |
| DatabaseTitle | CrossRef PubMed Publicly Available Content Database ProQuest Central Student ProQuest One Academic Middle East (New) ProQuest Biological Science Collection ProQuest Central Essentials ProQuest One Academic Eastern Edition ProQuest Central (Alumni Edition) SciTech Premium Collection ProQuest One Community College ProQuest Natural Science Collection Biological Science Database ProQuest SciTech Collection ProQuest Central China ProQuest Central ProQuest One Applied & Life Sciences ProQuest One Academic UKI Edition Natural Science Collection ProQuest Central Korea Biological Science Collection ProQuest Central (New) ProQuest One Academic ProQuest One Academic (New) MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitleList | PubMed Publicly Available Content Database AGRICOLA MEDLINE - Academic Publicly Available Content Database |
| Database_xml | – sequence: 1 dbid: DOA name: Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: 24P name: Wiley Online Library Open Access url: https://authorservices.wiley.com/open-science/open-access/browse-journals.html sourceTypes: Publisher – sequence: 3 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 4 dbid: BENPR name: ProQuest Central url: http://www.proquest.com/pqcentral?accountid=15518 sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| DocumentTitleAlternate | FENG et al |
| EISSN | 2475-4455 |
| EndPage | n/a |
| ExternalDocumentID | oai_doaj_org_article_512dd99b04ef494d9737873055c07a50 PMC7450174 32875268 10_1002_pld3_245 PLD3245 |
| Genre | article Journal Article |
| GrantInformation_xml | – fundername: China Scholarship Council – fundername: University of Florida Plant Molecular and Cellular Biology Graduate Program – fundername: UF Genetics Institute – fundername: National Science Foundation funderid: IOS‐1547787; 0845162 – fundername: University of Florida – fundername: ; – fundername: National Science Foundation grantid: IOS‐1547787; 0845162 |
| GroupedDBID | 0R~ 1OC 24P 8FE 8FH AAHHS ACCFJ ACCMX ACGFS ACXQS ADBBV ADKYN ADZMN AEEZP AEQDE AFKRA AIWBW AJBDE ALMA_UNASSIGNED_HOLDINGS ALUQN AOIJS AVUZU BBNVY BCNDV BENPR BHPHI CCPQU EBS ECGQY EJD GROUPED_DOAJ HCIFZ HYE IAO IGS ITC LK8 M7P M~E O9- OK1 PIMPY PROAC RPM WIN AAYXX CITATION PHGZM PHGZT NPM AAMMB ABUWG AEFGJ AGXDD AIDQK AIDYY AZQEC DWQXO GNUQQ PKEHL PQEST PQGLB PQQKQ PQUKI PRINS 7X8 PUEGO 7S9 L.6 5PM |
| ID | FETCH-LOGICAL-c5655-c718aeb74b3ee07928a7309d36b074040da3bc8790b588f663b7b2ac6f38eb63 |
| IEDL.DBID | 24P |
| ISSN | 2475-4455 |
| IngestDate | Wed Aug 27 01:29:14 EDT 2025 Thu Aug 21 14:20:57 EDT 2025 Fri Sep 05 17:25:06 EDT 2025 Fri Sep 05 10:19:02 EDT 2025 Wed Aug 13 06:49:51 EDT 2025 Wed Aug 13 04:22:24 EDT 2025 Wed Feb 19 02:02:06 EST 2025 Thu Apr 24 22:57:28 EDT 2025 Tue Jul 01 01:17:42 EDT 2025 Wed Jan 22 16:33:17 EST 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 8 |
| Keywords | transcription factor miRNA gene network alternative splicing jasmonate signaling splicing factor |
| Language | English |
| License | Attribution 2020 The Authors. Plant Direct published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c5655-c718aeb74b3ee07928a7309d36b074040da3bc8790b588f663b7b2ac6f38eb63 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 |
| OpenAccessLink | https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fpld3.245 |
| PMID | 32875268 |
| PQID | 2438844631 |
| PQPubID | 4370295 |
| PageCount | 18 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_512dd99b04ef494d9737873055c07a50 pubmedcentral_primary_oai_pubmedcentral_nih_gov_7450174 proquest_miscellaneous_2718326248 proquest_miscellaneous_2439623243 proquest_journals_2446843216 proquest_journals_2438844631 pubmed_primary_32875268 crossref_primary_10_1002_pld3_245 crossref_citationtrail_10_1002_pld3_245 wiley_primary_10_1002_pld3_245_PLD3245 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | August 2020 |
| PublicationDateYYYYMMDD | 2020-08-01 |
| PublicationDate_xml | – month: 08 year: 2020 text: August 2020 |
| PublicationDecade | 2020 |
| PublicationPlace | England |
| PublicationPlace_xml | – name: England – name: Oxford – name: Hoboken |
| PublicationTitle | Plant direct |
| PublicationTitleAlternate | Plant Direct |
| PublicationYear | 2020 |
| Publisher | John Wiley & Sons, Inc John Wiley and Sons Inc Wiley |
| Publisher_xml | – name: John Wiley & Sons, Inc – name: John Wiley and Sons Inc – name: Wiley |
| References | 2013; 25 2019; 12 2010; 464 2017; 45 2003; 13 2014; 26 2011; 98 2016; 143 2011; 12 2013; 162 2008; 146 2013; 8 2012; 13 1999; 126 2013; 6 2017; 114 2012; 10 2010; 63 2017; 9 2007; 35 2006; 133 2016; 33 2010; 22 2007; 134 2018; 177 2012; 70 2013; 14 2010; 26 2010; 24 2015; 82 2015; 43 2013; 199 2003; 3 2007; 6 2010; 153 2014; 13 2011; 23 2012; 28 2014; 165 2012; 24 2009; 59 2001; 52 2007; 19 2007; 448 2015; 5 2009; 21 2008; 18 2015; 11 2004; 45 2008; 59 2008; 11 2011; 39 2014; 111 2008; 320 2015; 8 2009; 136 2012; 31 2014; 42 2012; 196 2015; 27 2017; 90 2017; 15 2017; 55 2015; 66 2013; 31 2009; 5 2009; 185 2012; 158 2016; 170 2016; 9 2014; 33 2009; 149 2016; 67 2012; 40 e_1_2_7_5_1 e_1_2_7_3_1 e_1_2_7_9_1 e_1_2_7_7_1 e_1_2_7_19_1 e_1_2_7_60_1 e_1_2_7_83_1 e_1_2_7_17_1 e_1_2_7_62_1 e_1_2_7_81_1 e_1_2_7_15_1 e_1_2_7_41_1 e_1_2_7_64_1 e_1_2_7_87_1 e_1_2_7_13_1 e_1_2_7_43_1 e_1_2_7_66_1 e_1_2_7_85_1 e_1_2_7_11_1 e_1_2_7_45_1 e_1_2_7_68_1 e_1_2_7_47_1 e_1_2_7_26_1 e_1_2_7_49_1 e_1_2_7_28_1 e_1_2_7_73_1 e_1_2_7_50_1 e_1_2_7_71_1 e_1_2_7_25_1 e_1_2_7_31_1 e_1_2_7_52_1 e_1_2_7_77_1 e_1_2_7_23_1 e_1_2_7_33_1 e_1_2_7_54_1 e_1_2_7_75_1 e_1_2_7_21_1 e_1_2_7_35_1 e_1_2_7_56_1 e_1_2_7_37_1 e_1_2_7_58_1 e_1_2_7_79_1 e_1_2_7_39_1 e_1_2_7_6_1 e_1_2_7_4_1 e_1_2_7_80_1 e_1_2_7_8_1 Zhai Q. (e_1_2_7_84_1) 2015; 27 e_1_2_7_18_1 e_1_2_7_16_1 e_1_2_7_40_1 e_1_2_7_61_1 e_1_2_7_82_1 e_1_2_7_2_1 e_1_2_7_14_1 e_1_2_7_42_1 e_1_2_7_63_1 e_1_2_7_88_1 e_1_2_7_12_1 e_1_2_7_44_1 e_1_2_7_65_1 e_1_2_7_86_1 e_1_2_7_10_1 e_1_2_7_46_1 e_1_2_7_67_1 e_1_2_7_48_1 e_1_2_7_69_1 e_1_2_7_27_1 e_1_2_7_29_1 e_1_2_7_72_1 e_1_2_7_51_1 e_1_2_7_70_1 e_1_2_7_30_1 e_1_2_7_53_1 e_1_2_7_76_1 e_1_2_7_24_1 e_1_2_7_32_1 e_1_2_7_55_1 e_1_2_7_74_1 e_1_2_7_22_1 e_1_2_7_34_1 e_1_2_7_57_1 e_1_2_7_20_1 e_1_2_7_36_1 e_1_2_7_59_1 e_1_2_7_78_1 e_1_2_7_38_1 |
| References_xml | – volume: 146 start-page: 832 year: 2008 end-page: 838 article-title: New weapons and a rapid response against insect attack publication-title: Plant Physiology – volume: 9 start-page: 1040 year: 2016 end-page: 1050 article-title: The SNW domain of SKIP is required for its integration into the spliceosome and its interaction with the Paf1 complex in publication-title: Molecular Plant – volume: 22 start-page: 1633 year: 2010 end-page: 1646 article-title: The nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance publication-title: The Plant Cell – volume: 162 start-page: 1006 year: 2013 end-page: 1017 article-title: Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10 publication-title: Plant Physiology – volume: 25 start-page: 2907 year: 2013 end-page: 2924 article-title: Jasmonate regulates the INDUCER OF CBF EXPRESSION‐C‐REPEAT BINDING FACTOR/DRE BINDING FACTOR1 cascade and freezing tolerance in publication-title: The Plant Cell – volume: 21 start-page: 347 year: 2009 end-page: 361 article-title: SQUAMOSA promoter binding protein‐like7 is a central regulator for copper homeostasis in publication-title: The Plant Cell – volume: 320 start-page: 1643 year: 2008 end-page: 1647 article-title: Proliferating cells express mRNAs with shortened 3’ untranslated regions and fewer microRNA target sites publication-title: Science – volume: 448 start-page: 661 year: 2007 end-page: 665 article-title: JAZ repressor proteins are targets of the SCF complex during jasmonate signalling publication-title: Nature – volume: 133 start-page: 3539 year: 2006 end-page: 3547 article-title: Temporal regulation of shoot development in by and its target publication-title: Development – volume: 24 start-page: 3278 year: 2012 end-page: 3295 article-title: SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in publication-title: The Plant Cell – volume: 177 start-page: 226 year: 2018 end-page: 240 article-title: ALY RNA‐binding proteins are required for nucleocytosolic mRNA transport and modulate plant growth and development publication-title: Plant Physiology – volume: 158 start-page: 423 year: 2012 end-page: 438 article-title: The TOPLESS interactome: A framework for gene repression in publication-title: Plant Physiology – volume: 45 start-page: 5061 year: 2017 end-page: 5073 article-title: A high quality transcriptome for accurate transcript‐level analysis of alternative splicing publication-title: Nucleic Acids Research – volume: 185 start-page: 103 year: 2009 end-page: 113 article-title: A putative novel transcription factor, AtSKIP, is involved in abscisic acid signalling and confers salt and osmotic tolerance in publication-title: New Phytologist – volume: 39 start-page: W155 year: 2011 end-page: W159 article-title: psRNATarget: a plant small RNA target analysis server publication-title: Nucleic Acids Research – volume: 28 start-page: 2184 year: 2012 end-page: 2185 article-title: RSeQC: quality control of RNA‐seq experiments publication-title: Bioinformatics – volume: 6 year: 2013 article-title: Introns targeted by plant microRNAs: a possible novel mechanism of gene regulation publication-title: Rice – volume: 11 year: 2015 article-title: Multilayered organization of jasmonate signalling in the regulation of root growth publication-title: PLOS Genetics – volume: 149 start-page: 1945 year: 2009 end-page: 1957 article-title: Preferential up‐regulation of G2/M phage‐specific genes by overexpression of the hyperactive form of NtmybA2a lacking its negative regulation domain in tobacco BY‐2 Cells publication-title: Plant Physiology – volume: 196 start-page: 292 year: 2012 end-page: 305 article-title: Comparative proteomics of the recently and recurrently formed natural allopolyploid (Asteraceae) and its parents publication-title: New Phytologist – volume: 23 start-page: 1000 year: 2011 end-page: 1013 article-title: The Jasmonate‐ZIM domain proteins interact with the R2R3‐MYB transcription factors MYB21 and MYB24 to affect jasmonate‐regulated stamen development in publication-title: The Plant Cell – volume: 14 start-page: 153 year: 2013 end-page: 165 article-title: Alternative splicing: a pivotal step between eukaryotic transcription and translation publication-title: Nature Reviews Molecular Cell Biology – volume: 67 start-page: 4209 year: 2016 end-page: 4220 article-title: Salt stress response triggers activation of the jasmonate signaling pathway leading to inhibition of cell elongation in primary root publication-title: Journal of Experimental Botany – volume: 66 start-page: 5797 year: 2015 end-page: 5808 article-title: Identification and characterization of AtNUDX9 as a GDP‐D‐mannose pyrophosphohydrolase: its involvement in root growth inhibition in response to ammonium publication-title: Journal of Experimental Botany – volume: 67 start-page: 2367 year: 2016 end-page: 2386 article-title: Characterization of a activation‐tagged mutant with increased susceptibility to the fungal pathogen publication-title: Journal of Experimental Botany – volume: 448 start-page: 666 year: 2007 end-page: 671 article-title: The JAZ family of repressors is the missing link in jasmonate signalling publication-title: Nature – volume: 199 start-page: 212 year: 2013 end-page: 227 article-title: Identification of a novel microRNA(miRNA) from rice that targets an alternatively splicing transcript of the ( ) gene involved in pathogen resistance publication-title: New Phytologist – volume: 45 start-page: 1694 year: 2004 end-page: 1793 article-title: Comparative studies on the aldehyde oxidase (AAO) gene family revealed a major role of AAO3 in ABA biosynthesis in seeds publication-title: Plant and Cell Physiology – volume: 143 start-page: 3407 year: 2016 end-page: 3416 article-title: Jasmonate regulates juvenile‐to‐adult phase transition in rice publication-title: Development – volume: 19 start-page: 819 year: 2007 end-page: 830 article-title: The antagonist function of WRKY53 and ESR/ESP in leaf senescence is modulated by the jasmonic and salicylic acid equilibrium publication-title: The Plant Cell – volume: 59 start-page: 77 year: 2009 end-page: 87 article-title: The ZIM domain mediates homo‐ and heteromeric interactions between JAZ proteins publication-title: The Plant Journal – volume: 8 start-page: 1494 issue: 8 year: 2013 end-page: 512 article-title: De novo transcript sequence reconstruction from RNA‐seq using the Trinity platform for reference generation and analysis publication-title: Nature Protocols – volume: 136 start-page: 669 year: 2009 end-page: 687 article-title: Origin, biogenesis, and activity of plant microRNAs publication-title: Cell – volume: 12 start-page: 185 year: 2019 end-page: 198 article-title: A single JAZ repressor controls the jasmonate pathway in publication-title: Molecular Plant – volume: 111 start-page: 15166 year: 2014 end-page: 15171 article-title: Role for LSM genes in the regulation of circadian rhythms publication-title: Proceedings of the National Academy of Sciences of the United States of America – volume: 153 start-page: 1398 year: 2010 end-page: 1412 article-title: Genome‐wide classification and evolutionary analysis of the bHLH family of transcription factors in , poplar, rice, moss and algae publication-title: Plant Physiology – volume: 63 start-page: 613 year: 2010 end-page: 622 article-title: Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling publication-title: The Plant Journal – volume: 70 start-page: 421 year: 2012 end-page: 431 article-title: Alternative mRNA processing increases the complexity of microRNA‐based gene regulation in publication-title: The Plant Journal – volume: 10 start-page: 327 year: 2012 end-page: 336 article-title: Alternative polyadenylation mediates microRNA regulation of muscle stem cell function publication-title: Cell Stem Cell – volume: 82 start-page: 669 year: 2015 end-page: 679 article-title: Repression of jasmonate signaling by a non‐TIFY JAZ protein in publication-title: The Plant Journal – volume: 15 start-page: 1 year: 2017 end-page: 17 article-title: SKIP controls flowering time via the alternative splicing of SEF pre‐mRNA in publication-title: BMC Biology – volume: 8 start-page: 1038 year: 2015 end-page: 1052 article-title: SKIP confers osmotic tolerance during salt stress by controlling alternative gene splicing in publication-title: Molecular Plant – volume: 3 start-page: 525 year: 2003 end-page: 530 article-title: Id proteins in cell growth and tumorigenesis publication-title: Cancer Cell – volume: 31 start-page: 46 year: 2013 end-page: 53 article-title: Differential analysis of gene regulation at transcript resolution with RNA‐seq publication-title: Nature Biotechnology – volume: 98 start-page: 128 year: 2011 end-page: 136 article-title: Origin and evolutionary analysis of the plant‐specific TIFY transcription factor family publication-title: Genomics – volume: 11 start-page: 428 year: 2008 end-page: 435 article-title: Jasmonate signaling: a conserved mechanism of hormone sensing publication-title: Current Opinion in Plant Biology – volume: 13 start-page: 5751 year: 2014 end-page: 5766 article-title: Molecular reprogramming of in response to perturbation of jasmonate signaling publication-title: Journal of Proteome Research – volume: 27 start-page: 1634 year: 2015 end-page: 1649 article-title: Regulation of jasmonate‐induced leaf senescence by antagonism between bHLH subgroup IIIe and IIId factors in publication-title: The Plant Cell – volume: 5 start-page: 344 year: 2009 end-page: 350 article-title: (+)‐7‐ ‐Jasmonoyl‐L‐isoleucine is the endogenous bioactive jasmonate publication-title: Nature Chemical Biology – volume: 59 start-page: 41 year: 2008 end-page: 66 article-title: Plant immunity to insect herbivores publication-title: Annual Review of Plant Biology – volume: 24 start-page: 536 year: 2012 end-page: 550 article-title: JAZ8 lacks a canonical degron and has an EAR motif that mediates transcriptional repression of jasmonate responses in publication-title: The Plant Cell – volume: 26 start-page: 873 year: 2010 end-page: 881 article-title: Fast and SNP‐tolerant detection of complex variants and splicing in short reads publication-title: Bioinformatics – volume: 114 start-page: 1720 year: 2017 end-page: 1725 article-title: Structural insights into alternative splicing‐mediated desensitization of jasmonate signaling publication-title: Proceedings of the National Academy of Sciences of the United States of USA – volume: 24 start-page: 653 year: 2010 end-page: 658 article-title: MicroRNAs coordinate an alternative splicing network during mouse postnatal heart development publication-title: Genes & Development – volume: 12 year: 2011 article-title: Vive la différence: biogenesis and evolution of microRNAs in plants and animals publication-title: Genome Biology – volume: 5 start-page: 1717 year: 2015 end-page: 1714 article-title: Pre‐mRNA splicing in plants: functions of RNA‐binding proteins implicated in the splicing process publication-title: Biomolecules – volume: 42 start-page: D68 year: 2014 end-page: D73 article-title: miRBase: annotating high confidence microRNAs using deep sequencing data publication-title: Nucleic Acids Research – volume: 9 start-page: 1013 year: 2017 end-page: 1029 article-title: Evolution of the 3R‐MYB gene family in plants publication-title: Genome Biology and Evolution – volume: 43 start-page: D257 year: 2015 end-page: D260 article-title: SMART: recent updates, new developments and status in 2015 publication-title: Nucleic Acids Research – volume: 25 start-page: 3657 year: 2013 end-page: 3683 article-title: Complexity of the alternative splicing landscape in plants publication-title: The Plant Cell – volume: 6 start-page: 1638 year: 2007 end-page: 1655 article-title: The paragon algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra publication-title: Molecular & Cellular Proteomics – volume: 19 start-page: 2470 year: 2007 end-page: 2483 article-title: A downstream mediator in the growth repression limb of the jasmonate pathway publication-title: The Plant Cell – volume: 165 start-page: 1302 year: 2014 end-page: 1314 article-title: Temporal dynamics of growth and photosynthesis suppression in response to jasmonate signaling publication-title: Plant Physiology – volume: 464 start-page: 788 year: 2010 end-page: 791 article-title: NINJA connects the co‐repressor TOPLESS to jasmonate signalling publication-title: Nature – volume: 43 start-page: D222 year: 2015 end-page: D226 article-title: CDD: NCBI’s conserved domain database publication-title: Nucleic Acids Research – volume: 43 start-page: D447 year: 2015 end-page: D452 article-title: STRING V10: protein‐protein interaction networks, integrated over the tree of life publication-title: Nucleic Acids Research – volume: 35 start-page: W297 year: 2007 end-page: W299 article-title: ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets publication-title: Nucleic Acids Research – volume: 25 start-page: 3640 year: 2013 end-page: 3656 article-title: Alternative splicing at the intersection of biological timing, development, and stress responses publication-title: The Plant Cell – volume: 52 start-page: 1375 year: 2001 end-page: 1380 article-title: coactivator ALY‐like proteins, DIP1 and DIP2 interact physically with the DNA‐binding domain of the Zn‐finger poly(ADP‐ribose) polymerase publication-title: Journal of Experimental Botany – volume: 55 start-page: 287 year: 2017 end-page: 311 article-title: Tick tock: Circadian regulation of plant innate immunity publication-title: Annual Review of Phytopathology – volume: 170 start-page: 586 year: 2016 end-page: 599 article-title: Genome‐wide analysis of alternative splicing during development and drought stress in maize publication-title: Plant Physiology – volume: 134 start-page: 1101 year: 2007 end-page: 1110 article-title: R1R2R3‐Myb proteins positively regulate cytokinesis through activation of transcription in publication-title: Development – volume: 13 start-page: 700 year: 2012 end-page: 712 article-title: NMD: a multifaceted response to premature translational termination publication-title: Nature Reviews Molecular Cell Biology – volume: 13 start-page: 2498 year: 2003 end-page: 2504 article-title: Cytoscape: A software environment for integrated models of biomolecular interaction networks publication-title: Genome Research – volume: 18 start-page: 1381 year: 2008 end-page: 1392 article-title: Genome‐wide analyses of alternative splicing in plants: Opportunities and challenges publication-title: Genome Research – volume: 21 start-page: 131 year: 2009 end-page: 145 article-title: A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM‐Domain protein JAZ10 in publication-title: The Plant Cell – volume: 40 start-page: 2454 year: 2012 end-page: 2469 article-title: Alternative splicing and nonsense‐mediated decay modulate expression of important regulatory genes in publication-title: Nucleic Acids Research – volume: 27 start-page: 1620 year: 2015 end-page: 1633 article-title: Regulation of jasmonate‐mediated stamen development and seed production by a bHLH‐MYB complex in publication-title: The Plant Cell – volume: 33 start-page: 147 year: 2016 end-page: 156 article-title: Redundancy and specificity in jasmonate signalling publication-title: Current Opinion in Plant Biology – volume: 27 start-page: 2814 year: 2015 end-page: 2828 article-title: Transcriptional mechanism of jasmonate receptor COI1‐mediated delay of flowering time in publication-title: The Plant Cell – volume: 67 start-page: 751 year: 2016 end-page: 762 article-title: JAZ7 negatively regulates dark‐induced leaf senescence in publication-title: Journal of Experimental Botany – volume: 26 start-page: 230 year: 2014 end-page: 245 article-title: WRKY57 functions as a node of convergence for jasmonic acid‐ and auxin‐mediated signaling in jasmonic acid‐induced leaf senescence publication-title: The Plant Cell – volume: 126 start-page: 395 year: 1999 end-page: 401 article-title: Production of homo‐ and hetero‐dimeric isozymes from two aldehyde oxidase genes of publication-title: Journal of Biochemistry – volume: 90 start-page: 1144 year: 2017 end-page: 1155 article-title: Jasmonate inhibits COP1 activity to suppress hypocotyl elongation and promote cotyledon opening in etiolated seedlings publication-title: The Plant Journal – volume: 33 start-page: 401 year: 2014 end-page: 409 article-title: AtSKIP functions as a mediator between cytokinin and light signaling pathway in publication-title: Plant Cell Reports – volume: 31 start-page: 253 year: 2012 end-page: 270 article-title: Beyond gibberellins and abscisic acid: how ethylene and jasmonates control seed germination publication-title: Plant Cell Reports – volume: 24 start-page: 738 year: 2012 end-page: 761 article-title: Transcriptome sequencing identifies ‐regulated copper acquisition genes / and the copper dependence of iron homeostasis in publication-title: The Plant Cell – ident: e_1_2_7_80_1 doi: 10.1021/pr500739v – ident: e_1_2_7_11_1 doi: 10.1104/pp.110.153593 – ident: e_1_2_7_62_1 doi: 10.1016/S1535-6108(03)00141-7 – ident: e_1_2_7_6_1 doi: 10.1101/gr.053678.106 – ident: e_1_2_7_26_1 doi: 10.1242/dev.02801 – ident: e_1_2_7_23_1 doi: 10.1038/nchembio.161 – ident: e_1_2_7_82_1 doi: 10.1111/j.1365-313X.2011.04882.x – volume: 27 start-page: 2814 year: 2015 ident: e_1_2_7_84_1 article-title: Transcriptional mechanism of jasmonate receptor COI1‐mediated delay of flowering time in Arabidopsis publication-title: The Plant Cell – ident: e_1_2_7_7_1 doi: 10.1105/tpc.111.090431 – ident: e_1_2_7_72_1 doi: 10.1038/nbt.2450 – ident: e_1_2_7_79_1 doi: 10.1105/tpc.108.060137 – ident: e_1_2_7_60_1 doi: 10.1074/mcp.T600050-MCP200 – ident: e_1_2_7_86_1 doi: 10.1093/nar/gkx267 – ident: e_1_2_7_45_1 doi: 10.1093/nar/gku1221 – ident: e_1_2_7_66_1 doi: 10.1093/nar/gku1003 – ident: e_1_2_7_22_1 doi: 10.1093/nar/gkm311 – ident: e_1_2_7_56_1 doi: 10.1105/tpc.113.117523 – ident: e_1_2_7_14_1 doi: 10.1038/nature06006 – ident: e_1_2_7_85_1 doi: 10.1073/pnas.1616938114 – ident: e_1_2_7_40_1 doi: 10.1105/tpc.110.075242 – ident: e_1_2_7_13_1 doi: 10.1111/j.1365-313X.2009.03852.x – ident: e_1_2_7_75_1 doi: 10.1093/bioinformatics/bts356 – ident: e_1_2_7_49_1 doi: 10.1016/j.molp.2018.12.017 – ident: e_1_2_7_31_1 doi: 10.1101/gad.1894310 – ident: e_1_2_7_44_1 doi: 10.1146/annurev-phyto-080516-035451 – ident: e_1_2_7_65_1 doi: 10.1093/jexbot/52.359.1375 – ident: e_1_2_7_9_1 doi: 10.1104/pp.107.115683 – ident: e_1_2_7_70_1 doi: 10.1038/nature05960 – ident: e_1_2_7_46_1 doi: 10.1186/1939-8433-6-8 – ident: e_1_2_7_3_1 doi: 10.1104/pp.114.239004 – ident: e_1_2_7_88_1 doi: 10.1111/tpj.13539 – ident: e_1_2_7_64_1 doi: 10.1105/tpc.113.113803 – ident: e_1_2_7_51_1 doi: 10.1038/nature08854 – ident: e_1_2_7_27_1 doi: 10.1242/dev.138602 – ident: e_1_2_7_39_1 doi: 10.1093/nar/gku949 – ident: e_1_2_7_55_1 doi: 10.1105/tpc.15.00110 – ident: e_1_2_7_33_1 doi: 10.1104/pp.109.135582 – ident: e_1_2_7_77_1 doi: 10.1242/dev.02521 – ident: e_1_2_7_58_1 doi: 10.1093/pcp/pch198 – ident: e_1_2_7_2_1 doi: 10.1093/oxfordjournals.jbchem.a022463 – ident: e_1_2_7_78_1 doi: 10.1093/bioinformatics/btq057 – ident: e_1_2_7_52_1 doi: 10.1073/pnas.1409791111 – ident: e_1_2_7_38_1 doi: 10.1093/nar/gkt1181 – ident: e_1_2_7_34_1 doi: 10.1016/j.pbi.2008.05.004 – ident: e_1_2_7_63_1 doi: 10.1105/tpc.111.083089 – ident: e_1_2_7_76_1 doi: 10.1105/tpc.112.100081 – ident: e_1_2_7_43_1 doi: 10.1007/s00299-011-1180-1 – ident: e_1_2_7_53_1 doi: 10.1104/pp.18.00173 – ident: e_1_2_7_4_1 doi: 10.1186/gb-2011-12-4-221 – ident: e_1_2_7_67_1 doi: 10.1093/jxb/erv281 – ident: e_1_2_7_32_1 doi: 10.1093/nar/gkr932 – ident: e_1_2_7_12_1 doi: 10.1104/pp.111.186999 – ident: e_1_2_7_83_1 doi: 10.1093/jxb/erv487 – ident: e_1_2_7_10_1 doi: 10.1111/nph.12292 – ident: e_1_2_7_73_1 doi: 10.1093/jxb/erw202 – ident: e_1_2_7_71_1 doi: 10.1111/tpj.12841 – ident: e_1_2_7_17_1 doi: 10.1105/tpc.108.064097 – ident: e_1_2_7_30_1 doi: 10.1105/tpc.113.117838 – ident: e_1_2_7_18_1 doi: 10.1186/s12915-017-0422-2 – ident: e_1_2_7_20_1 doi: 10.1093/gbe/evx056 – ident: e_1_2_7_36_1 doi: 10.1111/j.1469-8137.2012.04251.x – ident: e_1_2_7_16_1 doi: 10.1111/j.1365-313X.2010.04265.x – ident: e_1_2_7_35_1 doi: 10.1038/nrm3454 – ident: e_1_2_7_25_1 doi: 10.1038/nprot.2013.084 – ident: e_1_2_7_54_1 doi: 10.1105/tpc.15.00116 – ident: e_1_2_7_15_1 doi: 10.1016/j.pbi.2016.07.005 – ident: e_1_2_7_50_1 doi: 10.1104/pp.113.218164 – ident: e_1_2_7_42_1 doi: 10.1111/j.1469-8137.2009.03032.x – ident: e_1_2_7_61_1 doi: 10.1105/tpc.111.093005 – ident: e_1_2_7_29_1 doi: 10.1105/tpc.113.112631 – ident: e_1_2_7_21_1 doi: 10.1016/j.molp.2015.01.011 – ident: e_1_2_7_87_1 doi: 10.1007/s00299-013-1540-0 – ident: e_1_2_7_47_1 doi: 10.3390/biom5031717 – ident: e_1_2_7_24_1 doi: 10.1371/journal.pgen.1005300 – ident: e_1_2_7_57_1 doi: 10.1126/science.1155390 – ident: e_1_2_7_8_1 doi: 10.1016/j.stem.2012.01.017 – ident: e_1_2_7_59_1 doi: 10.1101/gr.1239303 – ident: e_1_2_7_41_1 doi: 10.1016/j.molp.2016.04.011 – ident: e_1_2_7_37_1 doi: 10.1038/nrm3525 – ident: e_1_2_7_48_1 doi: 10.1105/tpc.106.042705 – ident: e_1_2_7_5_1 doi: 10.1016/j.ygeno.2011.05.002 – ident: e_1_2_7_81_1 doi: 10.1105/tpc.107.050708 – ident: e_1_2_7_68_1 doi: 10.1093/jxb/erw040 – ident: e_1_2_7_28_1 doi: 10.1146/annurev.arplant.59.032607.092825 – ident: e_1_2_7_19_1 doi: 10.1093/nar/gkr319 – ident: e_1_2_7_69_1 doi: 10.1104/pp.15.01267 – ident: e_1_2_7_74_1 doi: 10.1016/j.cell.2009.01.046 |
| SSID | ssj0002176085 |
| Score | 2.2280755 |
| Snippet | Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ) repressors is... Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM-domain (JAZ) repressors is... Abstract Jasmonate is an essential phytohormone regulating plant growth, development, and defense. Alternative splicing (AS) in jasmonate ZIM‐domain (JAZ)... |
| SourceID | doaj pubmedcentral proquest pubmed crossref wiley |
| SourceType | Open Website Open Access Repository Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | e00245 |
| SubjectTerms | Alternative splicing Amino acids Arabidopsis Archives & records Gene expression gene network Gene regulation Genes Genotypes Isoforms jasmonate signaling jasmonic acid Methyl jasmonate microRNA MicroRNAs miRNA Original Research Original Researchs plant growth plant hormones Post-transcription Proteins Proteomics Regulation Repressors Signal transduction splicing factor transcription (genetics) transcription factor Transcription factors Transcriptomics |
| SummonAdditionalLinks | – databaseName: DOAJ Directory of Open Access Journals dbid: DOA link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV3NT9swFLemnrhMTMAIA5RJiJ1CHdvxxwnxMYQqmHZgUm-RHb-ISl1aEfj_eXbSqtUKu3DNsyz7ffj9nu38TMhJUeVQoyNkQtc0E4rWmQFwmZYF2FAV0UildP9L3v4Ro3ExXnnqK9wJ6-iBO8UNMSF5b4yjAmphhDeKY9eBp6qiynbVOjV0pZgKazACbYlgYsE2S9lwPvX8jIW_llbyT6Tp34Qt_70iuQpdY-652Safe9CYXnSD_UI-QbNDzke2_Rv2viHFuhot5NN49N1EKu-0DQfTmJfSp-4WLLTYDLuwbuJn83bS7pKHm58PV7dZ_xxCViHqKrIK04gFp4TjAFQZpi3qwXguHeIADEZvuau0MtQVWtcIJZxyzFay5hqc5Htk0Mwa2Cdp7o0GxY3OrRVeO-eZRxjhgIpKQ04T8mOho7LqqcLDixXTsiM5ZmXQZonaTMj3Zct5R4-xoc1lUPNSHgit4wc0c9mbufyfmRNyuDBS2UdZi51zrbGe5fkbYiG14CyXOMylGMMnnInYBmYvsQsjA6rk77RRYd2TTOiEfO3cYjkZjhVnYMxJiFpzmLXZrkuayWOk8VaiwOVQJOQ0utab-it_313jAIuDj9DjN7LFwo5BvMJ4SAbPTy9whLDq2R3HCHoF2k0eUQ priority: 102 providerName: Directory of Open Access Journals – databaseName: ProQuest Central dbid: BENPR link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwELbK9sIFgXgFShUkBKdQx28fUEVpq6qCVYWK1Jtlxw6sVJLtpv3_HTuPdtXHNR5Zznhm_I0f3yD0iVdlqMEQCqZqXDCJ60KH4AoleLAxK8KJSunXXBz9Ycdn_GwDzce3MPFa5RgTU6D2bRX3yHcIo0pB7kLL3eVFEatGxdPVsYSGHUor-G-JYuwJ2oSQzPEMbe4dzE9-T7suAMAFgIyRhRaTneW5p19JfM10a11K9P33Yc67VydvQ9q0Jh0-R88GMJl_72f_BdoIzUu0e2y7_3FPPOSQb8PM-TwdiTeJ4jvv4oE1rFf5qr8dGzoQgy6sW_h22S26V-j08OD0x1ExlEkoKkBjvKhgebHBSeZoCFhqoiy4rfZUOMAH4KTeUlcpqbHjStUAMZx0xFaipio4QV-jWdM24S3KS69VkFSr0lrmlXOeeIAXLmBWqVDiDH0ZdWSqgUI8VrI4Nz35MTFRmwa0maGPk-Syp824R2Yvqnlqj0TX6UO7-msGvzGAR7zX2mEWaqaZ15KCZUWasgpLy2FIW-MkmcH7OnNjKw80M6EYJaWAYU7N4FbxrMQ2ob1KXWgR0SZ9REbGeCgIUxl605vF9DMUMtHIpJMhuWYwa3-73tIs_iV6b8k4hEmWoc_JtB7Unzn5uQ8D5O8eV8F79JTEPYJ0aXELzS5XV-EDAKlLtz14xzVNJR2w priority: 102 providerName: ProQuest |
| Title | Jasmonate induced alternative splicing responses in Arabidopsis |
| URI | https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fpld3.245 https://www.ncbi.nlm.nih.gov/pubmed/32875268 https://www.proquest.com/docview/2438844631 https://www.proquest.com/docview/2446843216 https://www.proquest.com/docview/2439623243 https://www.proquest.com/docview/2718326248 https://pubmed.ncbi.nlm.nih.gov/PMC7450174 https://doaj.org/article/512dd99b04ef494d9737873055c07a50 |
| Volume | 4 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV1Lb9QwELagvXBBRRRIH6sgVXBK69jj16mi0KqqoFqhVuotsmMHVirZ1ab9_x072cCKFnGNJ5YznvF8M3Y-E3Ig6jI0aAgF6IYWoGhTmBBcoaUINmZFNFEpfbuU59dwcSNuhlOV8V-Ynh9iLLhFz0jrdXRw67qj36Shi1vPDxmI52QTMT2P1s1gOtZXEGpLmm7kZKBEASDEinuWsqPVy2vRKJH2P4Y0_z4w-SeQTZHobIu8HCBk_qmf81fkWWhfk-ML2_2KlfCQY5aN8-XztBHeJmLvvIvb1Bil8mV_JjZ0KIZdWDfz80U367bJ1dnp1efzYrgcoagRg4mixqBig1PgeAhUGaYtOqvxXDpEBeia3nJXa2WoE1o3CCyccszWsuE6OMnfkI123oZ3JC-90UFxo0trwWvnPPMIKlygUOtQ0ox8XOmoqgfi8Hh_xW3VUx6zKmqzQm1m5P0ouejJMh6ROYlqHtsjvXV6MF_-qAZvqRCFeG-MoxAaMOCN4mhPkZyspsoKHNLeapKqwec67JxrjdktL59oBqmBs1LiMMdmdKa4Q2LbML9PXRgZMSb_h4yKq6BkoDPytjeL8WM45p-RPycjas1g1r52vaWd_Uyk3goELo6QkQ_JtJ7UXzX9-gUHKHb-V3CXvGCxRpAOLe6RjbvlfdhHIHXnJsljJmTz5PRy-n2SyhEPY2Qa_g |
| linkProvider | Wiley-Blackwell |
| linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Jb9QwFLbK9AAXBGILFAgSyynUsZ3YPlQVpa2m7XRUoUHqzbJjB0YqyTBphfhx_DeenYWOaHvrNbYs5_kt3_PyPYTeZkXqSlCEhIkSJ4zjMpHOmUTkmdM-K8KBSul4mo-_ssPT7HQN_enfwvhrlb1PDI7a1oXfI98kjAoBuQtNtxc_E181yp-u9iU0dFdawW4FirHuYceR-_0LUrhm62AX1vsdIft7s8_jpKsykBQAZrKkAO-sneHMUOcwl0Ro0HppaW4gvIKOW01NIbjEJhOihAhtuCG6yEsqnMkpDHsHrTO_fzJC6zt705MvwyYP4P0cME1PeovJ5uLM0o_EP566FAZDtYCrIO7_NzUvI-gQAvcfoPsddo0_tcr2EK256hHaPtTND78F72JI70FRbBxO4KvAKB43_nwcwmO8bC_juga6wRDazG29aObNYzS7DXk9QaOqrtwzFKdWCsepFKnWzApjLLGAZozDrBAuxRH60MtIFR1juS-ccaZarmWivDQVSDNCb4aei5al44o-O17MQ7vn1Q4f6uU31ZmpAvhjrZQGM1cyyazkFBTZs6IVmOsMprTRL5LqjL1R_1TzmmaWC0ZJmsM0h2awYn80oytXX4QhZO7BLb2hD_fuNydMROhpqxbDz1BIfD1xT4T4isKs_O1qSzX_HtjEOcvAK7MIvQ-qda381MlkFyaYPb9ZBK_R3fHseKImB9OjF-ge8dsT4b7kBhqdLy_cS8Bw5-ZVZykxUrdsm38B7OZZKw |
| linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Jb9QwFLZKKyEuCMQWKBAkllMYx3Zi-1BVlOmoG6MRKlJvlh07ZaSSDJNWiJ_Iv-LZWeiItrdeY8tynt_y2X7-HkJvsyJ1JShCwkSJE8ZxmUjnTCLyzGm_K8KBSunLNN_7xg5OspM19Kd_C-PTKnufGBy1rQt_Rj4ijAoBexeajsouLWI2nmwvfia-gpS_ae3LaeiuzILdCnRj3SOPQ_f7F2znmq39Maz9O0Imu8ef95Ku4kBSALDJkgI8tXaGM0Odw1wSocECpKW5gVAL-m41NYXgEptMiBKiteGG6CIvqXAmpzDsHbTBIeiDsW3s7E5nX4cDH8D-OeCbngAXk9HizNKPxD-kuhQSQ-WAq-Du_1mbl9F0CIeTB-h-h2PjT63iPURrrnqEtg9088Mfx7sYtvqgNDYOt_FVYBePG39XDqEyXraJua6BbjCENnNbL5p58xgd34a8nqD1qq7cMxSnVgoHghOp1swKYyyxgGyMw6wQLsUR-tDLSBUde7kvonGmWt5lorw0FUgzQm-GnouWseOKPjtezEO759gOH-rlqepMVgEUslZKg5krmWRWcgpK7RnSCsx1BlPa7BdJdYbfqH9qek0zywWjJM1hmkMzWLS_ptGVqy_CEDL3QJfe0Id7V5wTJiL0tFWL4WcobII9iU-E-IrCrPztaks1_x6YxTnLwEOzCL0PqnWt_NTsaAwTzJ7fLILX6C7YqDranx6-QPeIP6kIqZObaP18eeFeApw7N686Q4mRumXT_AsxdF1u |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Jasmonate+induced+alternative+splicing+responses+in+Arabidopsis&rft.jtitle=Plant+direct&rft.au=Feng%2C+Guanqiao&rft.au=Yoo%2C+Mi%E2%80%90Jeong&rft.au=Davenport%2C+Ruth&rft.au=Boatwright%2C+J+Lucas&rft.date=2020-08-01&rft.issn=2475-4455&rft.eissn=2475-4455&rft.volume=4&rft.issue=8+p.e00245-&rft_id=info:doi/10.1002%2Fpld3.245&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2475-4455&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2475-4455&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2475-4455&client=summon |