BALL - biochemical algorithms library 1.3

Background The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programmin...

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Published inBMC bioinformatics Vol. 11; no. 1; p. 531
Main Authors Hildebrandt, Andreas, Dehof, Anna Katharina, Rurainski, Alexander, Bertsch, Andreas, Schumann, Marcel, Toussaint, Nora C, Moll, Andreas, Stöckel, Daniel, Nickels, Stefan, Mueller, Sabine C, Lenhof, Hans-Peter, Kohlbacher, Oliver
Format Journal Article
LanguageEnglish
Published London BioMed Central 25.10.2010
Springer Nature B.V
BMC
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Online AccessGet full text
ISSN1471-2105
1471-2105
DOI10.1186/1471-2105-11-531

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Abstract Background The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programming toolbox does not only allow to greatly reduce application development times but also helps in ensuring stability and correctness by avoiding the error-prone reimplementation of complex algorithms and replacing them with calls into the library that has been well-tested by a large number of developers. In the ten years since its original publication, BALL has seen a substantial increase in functionality and numerous other improvements. Results Here, we discuss BALL's current functionality and highlight the key additions and improvements: support for additional file formats, molecular edit-functionality, new molecular mechanics force fields, novel energy minimization techniques, docking algorithms, and support for cheminformatics. Conclusions BALL is available for all major operating systems, including Linux, Windows, and MacOS X. It is available free of charge under the Lesser GNU Public License (LPGL). Parts of the code are distributed under the GNU Public License (GPL). BALL is available as source code and binary packages from the project web site at http://www.ball-project.org . Recently, it has been accepted into the debian project; integration into further distributions is currently pursued.
AbstractList The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programming toolbox does not only allow to greatly reduce application development times but also helps in ensuring stability and correctness by avoiding the error-prone reimplementation of complex algorithms and replacing them with calls into the library that has been well-tested by a large number of developers. In the ten years since its original publication, BALL has seen a substantial increase in functionality and numerous other improvements. Here, we discuss BALL's current functionality and highlight the key additions and improvements: support for additional file formats, molecular edit-functionality, new molecular mechanics force fields, novel energy minimization techniques, docking algorithms, and support for cheminformatics. BALL is available for all major operating systems, including Linux, Windows, and MacOS X. It is available free of charge under the Lesser GNU Public License (LPGL). Parts of the code are distributed under the GNU Public License (GPL). BALL is available as source code and binary packages from the project web site at http://www.ball-project.org. Recently, it has been accepted into the debian project; integration into further distributions is currently pursued.
The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programming toolbox does not only allow to greatly reduce application development times but also helps in ensuring stability and correctness by avoiding the error-prone reimplementation of complex algorithms and replacing them with calls into the library that has been well-tested by a large number of developers. In the ten years since its original publication, BALL has seen a substantial increase in functionality and numerous other improvements. Here, we discuss BALL's current functionality and highlight the key additions and improvements: support for additional file formats, molecular edit-functionality, new molecular mechanics force fields, novel energy minimization techniques, docking algorithms, and support for cheminformatics. BALL is available for all major operating systems, including Linux, Windows, and MacOS X. It is available free of charge under the Lesser GNU Public License (LPGL). Parts of the code are distributed under the GNU Public License (GPL). BALL is available as source code and binary packages from the project web site at http://www.ball-project.org. Recently, it has been accepted into the debian project; integration into further distributions is currently pursued.
Abstract Background The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programming toolbox does not only allow to greatly reduce application development times but also helps in ensuring stability and correctness by avoiding the error-prone reimplementation of complex algorithms and replacing them with calls into the library that has been well-tested by a large number of developers. In the ten years since its original publication, BALL has seen a substantial increase in functionality and numerous other improvements. Results Here, we discuss BALL's current functionality and highlight the key additions and improvements: support for additional file formats, molecular edit-functionality, new molecular mechanics force fields, novel energy minimization techniques, docking algorithms, and support for cheminformatics. Conclusions BALL is available for all major operating systems, including Linux, Windows, and MacOS X. It is available free of charge under the Lesser GNU Public License (LPGL). Parts of the code are distributed under the GNU Public License (GPL). BALL is available as source code and binary packages from the project web site at http://www.ball-project.org. Recently, it has been accepted into the debian project; integration into further distributions is currently pursued.
Background The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programming toolbox does not only allow to greatly reduce application development times but also helps in ensuring stability and correctness by avoiding the error-prone reimplementation of complex algorithms and replacing them with calls into the library that has been well-tested by a large number of developers. In the ten years since its original publication, BALL has seen a substantial increase in functionality and numerous other improvements. Results Here, we discuss BALL's current functionality and highlight the key additions and improvements: support for additional file formats, molecular edit-functionality, new molecular mechanics force fields, novel energy minimization techniques, docking algorithms, and support for cheminformatics. Conclusions BALL is available for all major operating systems, including Linux, Windows, and MacOS X. It is available free of charge under the Lesser GNU Public License (LPGL). Parts of the code are distributed under the GNU Public License (GPL). BALL is available as source code and binary packages from the project web site at http://www.ball-project.org . Recently, it has been accepted into the debian project; integration into further distributions is currently pursued.
The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programming toolbox does not only allow to greatly reduce application development times but also helps in ensuring stability and correctness by avoiding the error-prone reimplementation of complex algorithms and replacing them with calls into the library that has been well-tested by a large number of developers. In the ten years since its original publication, BALL has seen a substantial increase in functionality and numerous other improvements.BACKGROUNDThe Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive C++ class library of data structures and algorithms for molecular modeling and structural bioinformatics. Using BALL as a programming toolbox does not only allow to greatly reduce application development times but also helps in ensuring stability and correctness by avoiding the error-prone reimplementation of complex algorithms and replacing them with calls into the library that has been well-tested by a large number of developers. In the ten years since its original publication, BALL has seen a substantial increase in functionality and numerous other improvements.Here, we discuss BALL's current functionality and highlight the key additions and improvements: support for additional file formats, molecular edit-functionality, new molecular mechanics force fields, novel energy minimization techniques, docking algorithms, and support for cheminformatics.RESULTSHere, we discuss BALL's current functionality and highlight the key additions and improvements: support for additional file formats, molecular edit-functionality, new molecular mechanics force fields, novel energy minimization techniques, docking algorithms, and support for cheminformatics.BALL is available for all major operating systems, including Linux, Windows, and MacOS X. It is available free of charge under the Lesser GNU Public License (LPGL). Parts of the code are distributed under the GNU Public License (GPL). BALL is available as source code and binary packages from the project web site at http://www.ball-project.org. Recently, it has been accepted into the debian project; integration into further distributions is currently pursued.CONCLUSIONSBALL is available for all major operating systems, including Linux, Windows, and MacOS X. It is available free of charge under the Lesser GNU Public License (LPGL). Parts of the code are distributed under the GNU Public License (GPL). BALL is available as source code and binary packages from the project web site at http://www.ball-project.org. Recently, it has been accepted into the debian project; integration into further distributions is currently pursued.
ArticleNumber 531
Author Rurainski, Alexander
Hildebrandt, Andreas
Kohlbacher, Oliver
Moll, Andreas
Mueller, Sabine C
Bertsch, Andreas
Toussaint, Nora C
Stöckel, Daniel
Dehof, Anna Katharina
Nickels, Stefan
Lenhof, Hans-Peter
Schumann, Marcel
AuthorAffiliation 3 Intel Visual Computing Institute of Saarland University, Germany
1 Center for Bioinformatics Saar, Saarland University, Saarbrücken, Germany
2 Center for Bioinformatics Tübingen, Eberhard-Karls-Universität Tübingen, Germany
AuthorAffiliation_xml – name: 2 Center for Bioinformatics Tübingen, Eberhard-Karls-Universität Tübingen, Germany
– name: 1 Center for Bioinformatics Saar, Saarland University, Saarbrücken, Germany
– name: 3 Intel Visual Computing Institute of Saarland University, Germany
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  organization: Center for Bioinformatics Saar, Saarland University, Intel Visual Computing Institute of Saarland University
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  surname: Mueller
  fullname: Mueller, Sabine C
  organization: Center for Bioinformatics Saar, Saarland University, Intel Visual Computing Institute of Saarland University
– sequence: 11
  givenname: Hans-Peter
  surname: Lenhof
  fullname: Lenhof, Hans-Peter
  organization: Center for Bioinformatics Saar, Saarland University
– sequence: 12
  givenname: Oliver
  surname: Kohlbacher
  fullname: Kohlbacher, Oliver
  organization: Center for Bioinformatics Tübingen, Eberhard-Karls-Universität Tübingen
BackLink https://www.ncbi.nlm.nih.gov/pubmed/20973958$$D View this record in MEDLINE/PubMed
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ContentType Journal Article
Copyright Hildebrandt et al; licensee BioMed Central Ltd. 2010
2010 Hildebrandt et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright ©2010 Hildebrandt et al; licensee BioMed Central Ltd. 2010 Hildebrandt et al; licensee BioMed Central Ltd.
Copyright_xml – notice: Hildebrandt et al; licensee BioMed Central Ltd. 2010
– notice: 2010 Hildebrandt et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
– notice: Copyright ©2010 Hildebrandt et al; licensee BioMed Central Ltd. 2010 Hildebrandt et al; licensee BioMed Central Ltd.
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Issue 1
Keywords Rotamer Library
Amber Force Field
Rich Functionality
Docking Algorithm
Novice User
Language English
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Snippet Background The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an...
The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It provides an extensive...
Abstract Background: The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It...
Abstract Background The Biochemical Algorithms Library (BALL) is a comprehensive rapid application development framework for structural bioinformatics. It...
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StartPage 531
SubjectTerms Algorithms
Bioinformatics
Biomedical and Life Sciences
Computational Biology - methods
Computational Biology/Bioinformatics
Computer Appl. in Life Sciences
Databases, Factual
Life Sciences
Microarrays
Software
Structural analysis
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Title BALL - biochemical algorithms library 1.3
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