EUGENE'HOM: a generic similarity-based gene finder using multiple homologous sequences

EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon pre...

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Published inNucleic acids research Vol. 31; no. 13; pp. 3742 - 3745
Main Author Foissac, S.
Format Journal Article
LanguageEnglish
Published England Oxford Publishing Limited (England) 01.07.2003
Oxford University Press
Subjects
Algorithms
Arabidopsis thaliana
Codon, Initiator
computer analysis
Computer Graphics
Computer Science
computer software
DNA, Complementary - chemistry
DNA, Plant - analysis
Eukaryotic Cells
Genes
Genome
genomics
Internet
Life Sciences
Mathematics
nucleotide sequences
prediction
RNA Splice Sites
Sequence Analysis, DNA - methods
sequence homology
Sequence Homology, Nucleic Acid
Software
User-Computer Interface
Online AccessGet full text
ISSN1362-4962
0305-1048
1362-4954
1362-4962
DOI10.1093/nar/gkg586

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Abstract EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGENE'HOM to handle sequences from a variety of organisms. The current target of EUGENE'HOM is plant sequences. The EUGENE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.
AbstractList EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGENE'HOM to handle sequences from a variety of organisms. The current target of EUGENE'HOM is plant sequences. The EUGENE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.
EUGÈNE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGÈNE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGÈNE'HOM to handle sequences from a variety of organisms. The current target of EUGÈNE'HOM is plant sequences. The EUGÈNE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.
EUGE`NE’HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGE` NE’HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGE`NE’HOM to handle sequences from a variety of organisms. The current target of EUGE`NE’HOM is plant sequences. The EUGE`NE’HOM web site is available at genopole. toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.
EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGENE'HOM to handle sequences from a variety of organisms. The current target of EUGENE'HOM is plant sequences. The EUGENE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGENE'HOM to handle sequences from a variety of organisms. The current target of EUGENE'HOM is plant sequences. The EUGENE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.
Author Foissac, S.
AuthorAffiliation Laboratoire de Biométrie et Intelligence Artificielle, INRA, 31326, Castanet Tolosan Cedex, France
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Copyright Copyright Oxford University Press(England) Jul 01, 2003
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To whom correspondence should be addressed. Tel: +33 5 61 28 53 33; Fax: +33 5 61 28 53 35; Email : foissac@toulouse.inra.fr
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Snippet EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous...
EUGE`NE’HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGE` NE’HOM is able to take into account multiple homologous...
EUGÈNE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGÈNE'HOM is able to take into account multiple homologous...
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StartPage 3742
SubjectTerms Algorithms
Arabidopsis thaliana
Codon, Initiator
computer analysis
Computer Graphics
Computer Science
computer software
DNA, Complementary - chemistry
DNA, Plant - analysis
Eukaryotic Cells
Genes
Genome
genomics
Internet
Life Sciences
Mathematics
nucleotide sequences
prediction
RNA Splice Sites
Sequence Analysis, DNA - methods
sequence homology
Sequence Homology, Nucleic Acid
Software
User-Computer Interface
Title EUGENE'HOM: a generic similarity-based gene finder using multiple homologous sequences
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