Classifying Severity of Cystic Fibrosis Lung Disease Using Longitudinal Pulmonary Function Data

The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares polymorphisms in patients at extremes of phenotype, requiring accurate classification of pulmonary disease at varying ages. To evaluate approaches...

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Published inAmerican journal of respiratory and critical care medicine Vol. 174; no. 7; pp. 780 - 786
Main Authors Schluchter, Mark D, Konstan, Michael W, Drumm, Mitchell L, Yankaskas, James R, Knowles, Michael R
Format Journal Article
LanguageEnglish
Published New York, NY Am Thoracic Soc 01.10.2006
American Lung Association
American Thoracic Society
Subjects
Online AccessGet full text
ISSN1073-449X
1535-4970
1535-4970
DOI10.1164/rccm.200512-1919OC

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Abstract The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares polymorphisms in patients at extremes of phenotype, requiring accurate classification of pulmonary disease at varying ages. To evaluate approaches to quantify severity of pulmonary disease and their ability to discriminate between patients with CF at the extremes of phenotype. DeltaF508 homozygotes (n = 828) were initially classified as "severe" (approximate lowest quartile of FEV(1) (% pred) for age, 8-25 yr) or "mild" disease (highest quartile of FEV(1) for age, > or = 15 yr). FEV(1) measurements from the 5 yr before enrollment (total = 18,501 measurements; average 23 per subject) were analyzed with mixed models, and patient-specific estimates of FEV(1) (% pred) at ages 5, 10, 15, 20, and 25 yr and slope of FEV(1) versus age were examined for their ability to discriminate between groups using receiver operating characteristics (ROC) curve areas. Logistic regression of severity group on mixed model (empirical Bayes) estimates of intercept and slope of FEV(1) (% pred) versus age discriminated better than did classification using FEV(1) slope alone (ROC area = 0.995 vs. 0.821) and was equivalent to using estimated FEV(1) at 20 yr of age as a single discriminator. The estimated survival percentile from a joint survival/longitudinal model provided equally good classification (ROC area = 0.994). In CF, estimated FEV(1) (% pred) at 20 yr of age and the estimated survival percentile are useful indices of pulmonary disease severity.
AbstractList Rationale: The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares polymorphisms in patients at extremes of phenotype, requiring accurate classification of pulmonary disease at varying ages. Objective: To evaluate approaches to quantify severity of pulmonary disease and their ability to discriminate between patients with CF at the extremes of phenotype. Methods: ΔF508 homozygotes (n = 828) were initially classified as “severe” (approximate lowest quartile of FEV1 (% pred) for age, 8–25 yr) or “mild” disease (highest quartile of FEV1 for age, ⩾ 15 yr). FEV1 measurements from the 5 yr before enrollment (total = 18,501 measurements; average 23 per subject) were analyzed with mixed models, and patient-specific estimates of FEV1 (% pred) at ages 5, 10, 15, 20, and 25 yr and slope of FEV1 versus age were examined for their ability to discriminate between groups using receiver operating characteristics (ROC) curve areas. Results: Logistic regression of severity group on mixed model (empirical Bayes) estimates of intercept and slope of FEV1 (% pred) versus age discriminated better than did classification using FEV1 slope alone (ROC area = 0.995 vs. 0.821) and was equivalent to using estimated FEV1 at 20 yr of age as a single discriminator. The estimated survival percentile from a joint survival/longitudinal model provided equally good classification (ROC area = 0.994). Conclusions: In CF, estimated FEV1 (% pred) at 20 yr of age and the estimated survival percentile are useful indices of pulmonary disease severity.
The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares polymorphisms in patients at extremes of phenotype, requiring accurate classification of pulmonary disease at varying ages.RATIONALEThe study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares polymorphisms in patients at extremes of phenotype, requiring accurate classification of pulmonary disease at varying ages.To evaluate approaches to quantify severity of pulmonary disease and their ability to discriminate between patients with CF at the extremes of phenotype.OBJECTIVETo evaluate approaches to quantify severity of pulmonary disease and their ability to discriminate between patients with CF at the extremes of phenotype.DeltaF508 homozygotes (n = 828) were initially classified as "severe" (approximate lowest quartile of FEV(1) (% pred) for age, 8-25 yr) or "mild" disease (highest quartile of FEV(1) for age, > or = 15 yr). FEV(1) measurements from the 5 yr before enrollment (total = 18,501 measurements; average 23 per subject) were analyzed with mixed models, and patient-specific estimates of FEV(1) (% pred) at ages 5, 10, 15, 20, and 25 yr and slope of FEV(1) versus age were examined for their ability to discriminate between groups using receiver operating characteristics (ROC) curve areas.METHODSDeltaF508 homozygotes (n = 828) were initially classified as "severe" (approximate lowest quartile of FEV(1) (% pred) for age, 8-25 yr) or "mild" disease (highest quartile of FEV(1) for age, > or = 15 yr). FEV(1) measurements from the 5 yr before enrollment (total = 18,501 measurements; average 23 per subject) were analyzed with mixed models, and patient-specific estimates of FEV(1) (% pred) at ages 5, 10, 15, 20, and 25 yr and slope of FEV(1) versus age were examined for their ability to discriminate between groups using receiver operating characteristics (ROC) curve areas.Logistic regression of severity group on mixed model (empirical Bayes) estimates of intercept and slope of FEV(1) (% pred) versus age discriminated better than did classification using FEV(1) slope alone (ROC area = 0.995 vs. 0.821) and was equivalent to using estimated FEV(1) at 20 yr of age as a single discriminator. The estimated survival percentile from a joint survival/longitudinal model provided equally good classification (ROC area = 0.994).RESULTSLogistic regression of severity group on mixed model (empirical Bayes) estimates of intercept and slope of FEV(1) (% pred) versus age discriminated better than did classification using FEV(1) slope alone (ROC area = 0.995 vs. 0.821) and was equivalent to using estimated FEV(1) at 20 yr of age as a single discriminator. The estimated survival percentile from a joint survival/longitudinal model provided equally good classification (ROC area = 0.994).In CF, estimated FEV(1) (% pred) at 20 yr of age and the estimated survival percentile are useful indices of pulmonary disease severity.CONCLUSIONSIn CF, estimated FEV(1) (% pred) at 20 yr of age and the estimated survival percentile are useful indices of pulmonary disease severity.
The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares polymorphisms in patients at extremes of phenotype, requiring accurate classification of pulmonary disease at varying ages. To evaluate approaches to quantify severity of pulmonary disease and their ability to discriminate between patients with CF at the extremes of phenotype. DeltaF508 homozygotes (n = 828) were initially classified as "severe" (approximate lowest quartile of FEV(1) (% pred) for age, 8-25 yr) or "mild" disease (highest quartile of FEV(1) for age, > or = 15 yr). FEV(1) measurements from the 5 yr before enrollment (total = 18,501 measurements; average 23 per subject) were analyzed with mixed models, and patient-specific estimates of FEV(1) (% pred) at ages 5, 10, 15, 20, and 25 yr and slope of FEV(1) versus age were examined for their ability to discriminate between groups using receiver operating characteristics (ROC) curve areas. Logistic regression of severity group on mixed model (empirical Bayes) estimates of intercept and slope of FEV(1) (% pred) versus age discriminated better than did classification using FEV(1) slope alone (ROC area = 0.995 vs. 0.821) and was equivalent to using estimated FEV(1) at 20 yr of age as a single discriminator. The estimated survival percentile from a joint survival/longitudinal model provided equally good classification (ROC area = 0.994). In CF, estimated FEV(1) (% pred) at 20 yr of age and the estimated survival percentile are useful indices of pulmonary disease severity.
The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares polymorphisms in patients at extremes of phenotype, requiring accurate classification of pulmonary disease at varying ages. To evaluate approaches to quantify severity of pulmonary disease and their ability to discriminate between patients with CF at the extremes of phenotype. DeltaF508 homozygotes (n = 828) were initially classified as "severe" (approximate lowest quartile of FEV(1) (% pred) for age, 8-25 yr) or "mild" disease (highest quartile of FEV(1) for age, > or = 15 yr). FEV(1) measurements from the 5 yr before enrollment (total = 18,501 measurements; average 23 per subject) were analyzed with mixed models, and patient-specific estimates of FEV(1) (% pred) at ages 5, 10, 15, 20, and 25 yr and slope of FEV(1) versus age were examined for their ability to discriminate between groups using receiver operating characteristics (ROC) curve areas. Logistic regression of severity group on mixed model (empirical Bayes) estimates of intercept and slope of FEV(1) (% pred) versus age discriminated better than did classification using FEV(1) slope alone (ROC area = 0.995 vs. 0.821) and was equivalent to using estimated FEV(1) at 20 yr of age as a single discriminator. The estimated survival percentile from a joint survival/longitudinal model provided equally good classification (ROC area = 0.994). In CF, estimated FEV(1) (% pred) at 20 yr of age and the estimated survival percentile are useful indices of pulmonary disease severity.
Author Yankaskas, James R
Drumm, Mitchell L
Konstan, Michael W
Knowles, Michael R
Schluchter, Mark D
AuthorAffiliation Departments of Pediatrics and Genetics, Case Western Reserve University School of Medicine, Cleveland, Ohio; and Cystic Fibrosis–Pulmonary Research and Treatment Center, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina
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Issue 7
Keywords Lung disease
Intensive care
association studies
Respiratory disease
Metabolic diseases
Cystic disease
Cystic fibrosis
genetic modifiers
Genetic disease
Pulmonary fibrosis
Digestive diseases
FEV1
Resuscitation
Pancreatic disease
Language English
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Conflict of Interest Statement: None of the authors has a financial relationship with a commercial entity that has an interest in the subject of this manuscript.
Originally Published in Press as DOI: 10.1164/rccm.200512-1919OC on July 20, 2006
Correspondence and requests for reprints should be addressed to Mark D. Schluchter, Ph.D., Department of Epidemiology and Biostatistics, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106–4945. E-mail: mds11@case.edu
Supported by Cystic Fibrosis Foundation (CFF) grant KNOWLE00A0 (M.R.K.), CFF grant DRUMM00A0 (M.L.D.), and NIH grant HL68890 (M.R.K.).
This article has on online supplement, which is accessible from this issue's table of contents at www.atsjournals.org
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American Lung Association
American Thoracic Society
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– reference: 9427882 - J Pediatr. 1997 Dec;131(6):809-14
– reference: 9029632 - Pediatr Res. 1997 Feb;41(2):161-5
– reference: 15366769 - Adv Pediatr. 2004;51:5-36
– reference: 7063747 - Radiology. 1982 Apr;143(1):29-36
– reference: 2233932 - N Engl J Med. 1990 Nov 29;323(22):1517-22
– reference: 15716907 - Nat Rev Genet. 2005 Feb;6(2):109-18
– reference: 12483292 - Hum Genet. 2003 Jan;112(1):1-11
– reference: 15976373 - Am J Respir Crit Care Med. 2005 Oct 1;172(7):885-91
– reference: 3356151 - Control Clin Trials. 1988 Mar;9(1):32-46
– reference: 4759581 - J Chronic Dis. 1973 Sep;26(9):561-70
– reference: 6859656 - Am Rev Respir Dis. 1983 Jun;127(6):725-34
– reference: 16207846 - N Engl J Med. 2005 Oct 6;353(14):1443-53
– reference: 12111878 - Stat Med. 2002 May 15;21(9):1271-87
– reference: 3717769 - Am Rev Respir Dis. 1986 Jun;133(6):974-80
– reference: 15829237 - Mutat Res. 2005 Jun 3;573(1-2):54-69
– reference: 1285737 - N Engl J Med. 1992 Apr 30;326(18):1187-91
– reference: 16124861 - Annu Rev Genomics Hum Genet. 2005;6:237-60
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Snippet The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design compares...
Rationale: The study of genetic modifiers in cystic fibrosis (CF) lung disease requires rigorous phenotyping. One type of genetic association study design...
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SubjectTerms Adolescent
Adult
Age
Anesthesia. Intensive care medicine. Transfusions. Cell therapy and gene therapy
Biological and medical sciences
Child
Chronic obstructive pulmonary disease, asthma
Classification
Cystic fibrosis
Cystic Fibrosis - epidemiology
Cystic Fibrosis - genetics
Cystic Fibrosis - mortality
Cystic Fibrosis - physiopathology
D. Cystic Fibrosis
Estimates
Female
Forced Expiratory Volume
Genotype & phenotype
Humans
Intensive care medicine
Least-Squares Analysis
Logistic Models
Lung diseases
Male
Medical prognosis
Medical sciences
Patients
Phenotype
Pneumology
Polymorphism, Genetic
Pulmonary hypertension. Acute cor pulmonale. Pulmonary embolism. Pulmonary vascular diseases
Regression analysis
ROC Curve
Severity of Illness Index
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Title Classifying Severity of Cystic Fibrosis Lung Disease Using Longitudinal Pulmonary Function Data
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