Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows - Connor, Ryan; Shakya, Migun; Yarmosh, David A.; Maier, Wolfgang; Martin, Ross; Bradford, Rebecca; Brister, J. Rodney; Chain, Patrick S. G.; Copeland, Courtney A.; di Iulio, Julia; Hu, Bin; Ebert, Philip; et al. (Viruses, 2024)
Keywords: 60 APPLIED LIFE SCIENCES; Analysis; bioinformatics; Biotechnology; Computational Biology; COVID-19; COVID-19 - epidemiology; COVID-19 infection; COVID-19 vaccines; data collection; Datasets; DNA sequencing; Evaluation; Genetic diversity; genome; Genomes; genomics; Humans; industry; monitoring; Mutation; nanopores; Nucleotide sequence; nucleotide sequences; Nucleotide sequencing; pandemic; Pandemics; pathogens; Public health; Public health administration; SARS-CoV-2; SARS-CoV-2 - genetics; Severe acute respiratory syndrome coronavirus 2; Single-nucleotide polymorphism; Software; vaccines; variant calling; Virology; viruses; Whole genome sequencing; Workflow; United States; SARS-CoV-2; variant calling