Unique and Shared Epigenetic Programs of the CREBBP and EP300 Acetyltransferases in Germinal Center B Cells Reveal Targetable Dependencies in Lymphoma
Inactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart...
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| Published in | Immunity (Cambridge, Mass.) Vol. 51; no. 3; pp. 535 - 547.e9 |
|---|---|
| Main Authors | , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
Elsevier Inc
17.09.2019
Elsevier Limited |
| Subjects | |
| Online Access | Get full text |
| ISSN | 1074-7613 1097-4180 1097-4180 |
| DOI | 10.1016/j.immuni.2019.08.006 |
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| Abstract | Inactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart of FL and DLBCL, and in lymphomagenesis by using conditional GC-directed deletion mouse models targeting Crebbp or Ep300. We found that CREBBP and EP300 modulate common as well as distinct transcriptional programs implicated in separate anatomic and functional GC compartments. Consistently, deletion of Ep300 but not Crebbp impaired the fitness of GC B cells in vivo. Combined loss of Crebbp and Ep300 completely abrogated GC formation, suggesting that these proteins partially compensate for each other through common transcriptional targets. This synthetic lethal interaction was retained in CREBBP-mutant DLBCL cells and could be pharmacologically targeted with selective small molecule inhibitors of CREBBP and EP300 function. These data provide proof-of-principle for the clinical development of EP300-specific inhibitors in FL and DLBCL.
[Display omitted]
•CREBBP and EP300 control distinct as well as shared transcriptional targets in the GC•Deletion of Crebbp and Ep300 in B cells abrogates GC formation, revealing paralog lethality•CREBBP-mutant DLBCL cells are preferentially sensitive to EP300 deletion•EP300-dependency can be pharmacologically targeted by CREBBP and EP300 inhibitors
Loss-of-function mutations of CREBBP and EP300 are frequent and early events in the pathogenesis of FL and DLBCL, the two most common lymphoma subtypes. Meyer et al. uncover distinct as well as compensatory roles for these acetyltransferases in separate compartments of the germinal center and exploit this notion to document an EP300-dependency in CREBBP-deficient lymphoma cells that can be targeted therapeutically. |
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| AbstractList | SummaryInactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart of FL and DLBCL, and in lymphomagenesis by using conditional GC-directed deletion mouse models targeting Crebbp or Ep300. We found that CREBBP and EP300 modulate common as well as distinct transcriptional programs implicated in separate anatomic and functional GC compartments. Consistently, deletion of Ep300 but not Crebbp impaired the fitness of GC B cells in vivo. Combined loss of Crebbp and Ep300 completely abrogated GC formation, suggesting that these proteins partially compensate for each other through common transcriptional targets. This synthetic lethal interaction was retained in CREBBP-mutant DLBCL cells and could be pharmacologically targeted with selective small molecule inhibitors of CREBBP and EP300 function. These data provide proof-of-principle for the clinical development of EP300-specific inhibitors in FL and DLBCL. Inactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart of FL and DLBCL, and in lymphomagenesis by using conditional GC-directed deletion mouse models targeting Crebbp or Ep300. We found that CREBBP and EP300 modulate common as well as distinct transcriptional programs implicated in separate anatomic and functional GC compartments. Consistently, deletion of Ep300 but not Crebbp impaired the fitness of GC B cells in vivo. Combined loss of Crebbp and Ep300 completely abrogated GC formation, suggesting that these proteins partially compensate for each other through common transcriptional targets. This synthetic lethal interaction was retained in CREBBP-mutant DLBCL cells and could be pharmacologically targeted with selective small molecule inhibitors of CREBBP and EP300 function. These data provide proof-of-principle for the clinical development of EP300-specific inhibitors in FL and DLBCL.Inactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart of FL and DLBCL, and in lymphomagenesis by using conditional GC-directed deletion mouse models targeting Crebbp or Ep300. We found that CREBBP and EP300 modulate common as well as distinct transcriptional programs implicated in separate anatomic and functional GC compartments. Consistently, deletion of Ep300 but not Crebbp impaired the fitness of GC B cells in vivo. Combined loss of Crebbp and Ep300 completely abrogated GC formation, suggesting that these proteins partially compensate for each other through common transcriptional targets. This synthetic lethal interaction was retained in CREBBP-mutant DLBCL cells and could be pharmacologically targeted with selective small molecule inhibitors of CREBBP and EP300 function. These data provide proof-of-principle for the clinical development of EP300-specific inhibitors in FL and DLBCL. Inactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart of FL and DLBCL, and in lymphomagenesis by using conditional GC-directed deletion mouse models targeting Crebbp or Ep300. We found that CREBBP and EP300 modulate common as well as distinct transcriptional programs implicated in separate anatomic and functional GC compartments. Consistently, deletion of Ep300 but not Crebbp impaired the fitness of GC B cells in vivo. Combined loss of Crebbp and Ep300 completely abrogated GC formation, suggesting that these proteins partially compensate for each other through common transcriptional targets. This synthetic lethal interaction was retained in CREBBP-mutant DLBCL cells and could be pharmacologically targeted with selective small molecule inhibitors of CREBBP and EP300 function. These data provide proof-of-principle for the clinical development of EP300-specific inhibitors in FL and DLBCL. Inactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart of FL and DLBCL, and in lymphomagenesis by using conditional GC-directed deletion mouse models targeting Crebbp or Ep300. We found that CREBBP and EP300 modulate common as well as distinct transcriptional programs implicated in separate anatomic and functional GC compartments. Consistently, deletion of Ep300 but not Crebbp impaired the fitness of GC B cells in vivo. Combined loss of Crebbp and Ep300 completely abrogated GC formation, suggesting that these proteins partially compensate for each other through common transcriptional targets. This synthetic lethal interaction was retained in CREBBP-mutant DLBCL cells and could be pharmacologically targeted with selective small molecule inhibitors of CREBBP and EP300 function. These data provide proof-of-principle for the clinical development of EP300-specific inhibitors in FL and DLBCL. Loss-of-function mutations of CREBBP and EP300 are frequent and early events in the pathogenesis of FL and DLBCL, the two most common lymphoma subtypes. Meyer et al. uncover distinct as well as compensatory roles for these acetyltransferases in separate compartments of the germinal center and exploit this notion to document an EP300-dependency in CREBBP-deficient lymphoma cells that can be targeted therapeutically. Inactivating mutations of the CREBBP and EP300 acetyltransferases are among the most common genetic alterations in diffuse large B cell lymphoma (DLBCL) and follicular lymphoma (FL). Here, we examined the relationship between these two enzymes in germinal center (GC) B cells, the normal counterpart of FL and DLBCL, and in lymphomagenesis by using conditional GC-directed deletion mouse models targeting Crebbp or Ep300. We found that CREBBP and EP300 modulate common as well as distinct transcriptional programs implicated in separate anatomic and functional GC compartments. Consistently, deletion of Ep300 but not Crebbp impaired the fitness of GC B cells in vivo. Combined loss of Crebbp and Ep300 completely abrogated GC formation, suggesting that these proteins partially compensate for each other through common transcriptional targets. This synthetic lethal interaction was retained in CREBBP-mutant DLBCL cells and could be pharmacologically targeted with selective small molecule inhibitors of CREBBP and EP300 function. These data provide proof-of-principle for the clinical development of EP300-specific inhibitors in FL and DLBCL. [Display omitted] •CREBBP and EP300 control distinct as well as shared transcriptional targets in the GC•Deletion of Crebbp and Ep300 in B cells abrogates GC formation, revealing paralog lethality•CREBBP-mutant DLBCL cells are preferentially sensitive to EP300 deletion•EP300-dependency can be pharmacologically targeted by CREBBP and EP300 inhibitors Loss-of-function mutations of CREBBP and EP300 are frequent and early events in the pathogenesis of FL and DLBCL, the two most common lymphoma subtypes. Meyer et al. uncover distinct as well as compensatory roles for these acetyltransferases in separate compartments of the germinal center and exploit this notion to document an EP300-dependency in CREBBP-deficient lymphoma cells that can be targeted therapeutically. |
| Author | Vantrimpont, Thomas Meyer, Stefanie N. Vlasevska, Sofija Scuoppo, Claudio Pasqualucci, Laura Duval, Romain Holmes, Antony B. Garcia-Ibanez, Laura Dalla-Favera, Riccardo Bal, Elodie Nataraj, Sarah Brooks, Nigel Holloman, Mara Basso, Katia |
| AuthorAffiliation | 4 Department of Genetics & Development, Columbia University, New York, NY 10032, USA 1 Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA 3 Cell Centric, Chesterford Research Park, Little Chesterford, Cambridge, CB10 1XL, UK 6 Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA 7 Lead Contact 2 Department of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA 5 Department of Microbiology & Immunology, Columbia University, New York, NY 10032, USA |
| AuthorAffiliation_xml | – name: 7 Lead Contact – name: 1 Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – name: 6 Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA – name: 3 Cell Centric, Chesterford Research Park, Little Chesterford, Cambridge, CB10 1XL, UK – name: 2 Department of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA – name: 4 Department of Genetics & Development, Columbia University, New York, NY 10032, USA – name: 5 Department of Microbiology & Immunology, Columbia University, New York, NY 10032, USA |
| Author_xml | – sequence: 1 givenname: Stefanie N. surname: Meyer fullname: Meyer, Stefanie N. organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 2 givenname: Claudio surname: Scuoppo fullname: Scuoppo, Claudio organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 3 givenname: Sofija surname: Vlasevska fullname: Vlasevska, Sofija organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 4 givenname: Elodie surname: Bal fullname: Bal, Elodie organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 5 givenname: Antony B. surname: Holmes fullname: Holmes, Antony B. organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 6 givenname: Mara surname: Holloman fullname: Holloman, Mara organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 7 givenname: Laura surname: Garcia-Ibanez fullname: Garcia-Ibanez, Laura organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 8 givenname: Sarah surname: Nataraj fullname: Nataraj, Sarah organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 9 givenname: Romain surname: Duval fullname: Duval, Romain organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 10 givenname: Thomas surname: Vantrimpont fullname: Vantrimpont, Thomas organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 11 givenname: Katia surname: Basso fullname: Basso, Katia organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 12 givenname: Nigel surname: Brooks fullname: Brooks, Nigel organization: Cell Centric, Chesterford Research Park, Little Chesterford, Cambridge, CB10 1XL, UK – sequence: 13 givenname: Riccardo surname: Dalla-Favera fullname: Dalla-Favera, Riccardo organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA – sequence: 14 givenname: Laura orcidid: 0000-0001-6819-7370 surname: Pasqualucci fullname: Pasqualucci, Laura email: lp171@cumc.columbia.edu organization: Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/31519498$$D View this record in MEDLINE/PubMed |
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| Keywords | dark zone diffuse large cell lymphoma CREBBP acetyltransferase inhibitor synthetic lethality EP300 light zone germinal center |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 AUTHORS CONTRIBUTIONS Conceptualization: L.P.; Methodology: L.P. and S.N.M.; Investigation: S.N.M., C.S., S.V., E.B, M.H., L.G.-I, R.D., T.V., and L.P.; Software: A.B.H. andK.B.; Validation: L.P.; Formal Analysis: S.N.M., A.B.H., and L.P.; Resources: N.B.; Data Curation: A.H. and L.P.; Writing – Original Draft: L.P., S.N.M.; Writing – Review & Editing: L.P., R.D.-F., S.N.M., S.V., E.B, M.H., K.B., C.S.; Visualization: L.P., S.N.M., S.V.; Supervision: L.P., R.D.-F.; Project administration: L.P.; Funding Acquisition: L.P., R.D.-F. |
| ORCID | 0000-0001-6819-7370 |
| OpenAccessLink | https://proxy.k.utb.cz/login?url=http://www.cell.com/article/S1074761319303322/pdf |
| PMID | 31519498 |
| PQID | 2292002589 |
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| PublicationCentury | 2000 |
| PublicationDate | 2019-09-17 |
| PublicationDateYYYYMMDD | 2019-09-17 |
| PublicationDate_xml | – month: 09 year: 2019 text: 2019-09-17 day: 17 |
| PublicationDecade | 2010 |
| PublicationPlace | United States |
| PublicationPlace_xml | – name: United States – name: Cambridge |
| PublicationTitle | Immunity (Cambridge, Mass.) |
| PublicationTitleAlternate | Immunity |
| PublicationYear | 2019 |
| Publisher | Elsevier Inc Elsevier Limited |
| Publisher_xml | – name: Elsevier Inc – name: Elsevier Limited |
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| SubjectTerms | acetyltransferase inhibitor Acetyltransferases - genetics Animal models Animals B-cell lymphoma B-Lymphocytes - physiology Cell Line Clonal deletion CREB-Binding Protein - genetics CREBBP dark zone diffuse large cell lymphoma E1A-Associated p300 Protein - genetics Enzymes EP300 Epigenesis, Genetic - genetics Fitness Genomes Genomics germinal center Germinal Center - physiology Germinal centers HEK293 Cells Humans Inhibitors light zone Lymphocytes B Lymphoma Lymphoma, Follicular - etiology Lymphoma, Large B-Cell, Diffuse - genetics Mice Mice, Inbred C57BL Mutation Reproductive fitness Sequence Deletion - genetics Software synthetic lethality Transcription Transcription, Genetic - genetics |
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| Title | Unique and Shared Epigenetic Programs of the CREBBP and EP300 Acetyltransferases in Germinal Center B Cells Reveal Targetable Dependencies in Lymphoma |
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