A systematic review of biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data - Wysocka, Magdalena; Wysocki, Oskar; Zufferey, Marie; Landers, Dónal; Freitas, André (BMC bioinformatics, 2023)
Keywords: Algorithms; Bioinformatics; Biological Evolution; Biology; Biomarkers; Biomedical and Life Sciences; Cancer; Cancer Genomics; Coding; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Deep Learning; Domains; Explainable AI; Genomics; Graph Neural Networks; Graph representations; Humans; Knowledge; Life Sciences; Machine learning; Medical Oncology; Medical research; Microarrays; Multi-omics Data; Neoplasms - genetics; Oncology; Proteins; Sparse Neural Networks; Statistical analysis; Statistical inference; Systematic review; Taxonomy; Trends; Explainable AI; Multi-omics Data; Cancer Genomics; Sparse Neural Networks; Domain Knowledge Integration; Deep Learning; Graph Neural Networks