MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts - Hita, Andrea; Brocart, Gilles; Fernandez, Ana; Rehmsmeier, Marc; Alemany, Anna; Schvartzman, Sol (BMC bioinformatics, 2022)
Keywords: Algorithms; Alignment; Annotations; Bioinformatics; Biomedical and Life Sciences; Biotypes; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Computer applications; Computer programs; Copy number; Experiments; Gene expression; Gene mapping; Gene sequencing; Genomics; Life Sciences; Microarrays; MicroRNAs; NGS; Non-coding; Pipelines; Proteins; Quantification; Ribonucleic acid; RNA; RNA-Seq; Sequence Analysis, RNA; Small RNA; Software; Source code; Transcription; Transcriptome; Transcriptomes; Transcriptomics; Map equation; Alignment; RNA-seq; Quantification; Multi-mapping; Small RNA; Non-coding; NGS; Multi-overlapping; Counting; Single-cell